Variant report

Variant	rs62180324
Chromosome Location	chr2:63416606-63416607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:63277365..63278980-chr2:63414915..63416689,2	MCF-7	breast:
2	chr2:63305807..63306583-chr2:63416196..63416702,2	K562	blood:
3	chr2:63305442..63306670-chr2:63415898..63416755,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115507	Chromatin interaction

Extended variants
information (count: 181 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10169209	0.86[ASN][1000 genomes]
rs10169292	0.86[ASN][1000 genomes]
rs10169579	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10173637	0.86[ASN][1000 genomes]
rs10203263	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207356	0.86[ASN][1000 genomes]
rs10209822	0.86[ASN][1000 genomes]
rs11125957	0.86[ASN][1000 genomes]
rs11125965	0.86[ASN][1000 genomes]
rs11675647	0.86[ASN][1000 genomes]
rs11684108	0.86[ASN][1000 genomes]
rs11685910	0.86[ASN][1000 genomes]
rs11686044	0.86[ASN][1000 genomes]
rs11691166	0.86[ASN][1000 genomes]
rs11691357	0.86[ASN][1000 genomes]
rs11691718	0.86[ASN][1000 genomes]
rs12151606	0.96[ASN][1000 genomes]
rs12618974	0.86[ASN][1000 genomes]
rs12623431	0.86[ASN][1000 genomes]
rs12713476	0.86[ASN][1000 genomes]
rs12713477	0.86[ASN][1000 genomes]
rs12713478	0.86[ASN][1000 genomes]
rs12994711	0.86[ASN][1000 genomes]
rs13020171	0.86[ASN][1000 genomes]
rs13387839	1.00[ASN][1000 genomes]
rs13411657	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417792	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13422328	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13427868	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13431765	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400686	0.86[ASN][1000 genomes]
rs1400687	0.86[ASN][1000 genomes]
rs1400688	0.86[ASN][1000 genomes]
rs1517401	0.86[ASN][1000 genomes]
rs1517402	0.86[ASN][1000 genomes]
rs1517404	0.86[ASN][1000 genomes]
rs1517405	0.86[ASN][1000 genomes]
rs1589092	0.86[ASN][1000 genomes]
rs1607203	0.86[ASN][1000 genomes]
rs1607204	0.86[ASN][1000 genomes]
rs1607205	0.86[ASN][1000 genomes]
rs1607206	0.86[ASN][1000 genomes]
rs17348134	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17408652	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17408750	0.81[AFR][1000 genomes]
rs17408841	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17432684	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432775	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1850984	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030188	0.86[ASN][1000 genomes]
rs2030189	0.86[ASN][1000 genomes]
rs2090478	0.86[ASN][1000 genomes]
rs2090479	0.86[ASN][1000 genomes]
rs2176417	0.86[ASN][1000 genomes]
rs2263636	0.86[ASN][1000 genomes]
rs2292794	0.86[ASN][1000 genomes]
rs2292795	0.86[ASN][1000 genomes]
rs2421862	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2421881	0.86[ASN][1000 genomes]
rs2421883	0.86[ASN][1000 genomes]
rs2421884	0.86[ASN][1000 genomes]
rs2421886	0.86[ASN][1000 genomes]
rs2421887	0.86[ASN][1000 genomes]
rs2464042	0.86[ASN][1000 genomes]
rs2677436	0.82[ASN][1000 genomes]
rs2677437	0.86[ASN][1000 genomes]
rs2677438	0.86[ASN][1000 genomes]
rs2677442	0.86[ASN][1000 genomes]
rs2699388	0.86[ASN][1000 genomes]
rs2699389	0.86[ASN][1000 genomes]
rs2699390	0.86[ASN][1000 genomes]
rs2699391	0.86[ASN][1000 genomes]
rs2699399	0.86[ASN][1000 genomes]
rs2901580	0.86[ASN][1000 genomes]
rs2945032	0.86[ASN][1000 genomes]
rs2951185	0.86[ASN][1000 genomes]
rs2951192	0.86[ASN][1000 genomes]
rs4353635	0.86[ASN][1000 genomes]
rs4416201	0.86[ASN][1000 genomes]
rs4428008	0.86[ASN][1000 genomes]
rs4429457	0.86[ASN][1000 genomes]
rs4578846	0.86[ASN][1000 genomes]
rs4611627	0.86[ASN][1000 genomes]
rs4613259	0.86[ASN][1000 genomes]
rs4671468	0.86[ASN][1000 genomes]
rs4671470	0.86[ASN][1000 genomes]
rs4671471	0.86[ASN][1000 genomes]
rs4671472	0.86[ASN][1000 genomes]
rs4671473	0.86[ASN][1000 genomes]
rs4671474	0.86[ASN][1000 genomes]
rs4671475	0.86[ASN][1000 genomes]
rs4671476	0.86[ASN][1000 genomes]
rs4671479	0.86[ASN][1000 genomes]
rs4671480	0.86[ASN][1000 genomes]
rs4671481	0.86[ASN][1000 genomes]
rs4671482	0.86[ASN][1000 genomes]
rs4671483	0.86[ASN][1000 genomes]
rs4671484	0.86[ASN][1000 genomes]
rs4671485	0.86[ASN][1000 genomes]
rs4671487	0.86[ASN][1000 genomes]
rs4671488	0.86[ASN][1000 genomes]
rs58483312	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177761	1.00[ASN][1000 genomes]
rs62177762	1.00[ASN][1000 genomes]
rs62177774	0.96[ASN][1000 genomes]
rs62177782	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177783	1.00[ASN][1000 genomes]
rs62177787	0.86[ASN][1000 genomes]
rs62177789	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177790	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177791	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177793	1.00[ASN][1000 genomes]
rs62177795	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177797	0.86[ASN][1000 genomes]
rs62177820	1.00[ASN][1000 genomes]
rs62177821	1.00[ASN][1000 genomes]
rs62177824	0.86[ASN][1000 genomes]
rs62180269	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180275	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180276	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180308	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180310	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180312	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180314	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62180316	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180317	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180320	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62180322	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180323	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180325	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6545984	0.86[ASN][1000 genomes]
rs6545985	0.86[ASN][1000 genomes]
rs6545986	0.86[ASN][1000 genomes]
rs6545989	0.86[ASN][1000 genomes]
rs6545991	0.86[ASN][1000 genomes]
rs6545997	0.86[ASN][1000 genomes]
rs6704562	0.86[ASN][1000 genomes]
rs6705322	0.82[ASN][1000 genomes]
rs6705776	0.86[ASN][1000 genomes]
rs6706180	0.86[ASN][1000 genomes]
rs6706424	0.86[ASN][1000 genomes]
rs6708627	0.86[ASN][1000 genomes]
rs6708847	0.86[ASN][1000 genomes]
rs6709115	0.86[ASN][1000 genomes]
rs6713500	0.86[ASN][1000 genomes]
rs6714298	0.86[ASN][1000 genomes]
rs6717060	0.86[ASN][1000 genomes]
rs6718609	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724044	0.86[ASN][1000 genomes]
rs6725694	0.86[ASN][1000 genomes]
rs6728844	0.86[ASN][1000 genomes]
rs6734468	0.86[ASN][1000 genomes]
rs6736788	0.86[ASN][1000 genomes]
rs6737820	0.86[ASN][1000 genomes]
rs6744720	0.86[ASN][1000 genomes]
rs6757463	0.86[ASN][1000 genomes]
rs6757487	0.86[ASN][1000 genomes]
rs7349440	0.86[ASN][1000 genomes]
rs7558922	0.86[ASN][1000 genomes]
rs7559137	0.86[ASN][1000 genomes]
rs7561802	0.86[ASN][1000 genomes]
rs7567088	0.86[ASN][1000 genomes]
rs7568224	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7570649	0.86[ASN][1000 genomes]
rs7582434	0.86[ASN][1000 genomes]
rs7585664	0.86[ASN][1000 genomes]
rs7591562	0.86[ASN][1000 genomes]
rs7596446	0.86[ASN][1000 genomes]
rs7596580	0.86[ASN][1000 genomes]
rs7605319	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608966	0.86[ASN][1000 genomes]
rs908621	0.86[ASN][1000 genomes]
rs908622	0.86[ASN][1000 genomes]
rs9967684	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1006848	chr2:63061816-63631407	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2756598	chr2:63085848-63491438	Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3340700	chr2:63127412-63534998	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1004678	chr2:63230722-63562484	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv470468	chr2:63374063-63449512	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv535768	chr2:63413596-63631407	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63416200-63417000	ZNF genes & repeats	Dnd41	blood
2	chr2:63416200-63419000	Enhancers	HepG2	liver
3	chr2:63416400-63419400	Weak transcription	Fetal Lung	lung
4	chr2:63416400-63420600	Weak transcription	Left Ventricle	heart
5	chr2:63416400-63435800	Weak transcription	Ovary	ovary
6	chr2:63416600-63433600	Weak transcription	Aorta	Aorta

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