Variant report

Variant	rs621891
Chromosome Location	chr10:89797624-89797625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620225..89623411-chr10:89793964..89797679,4	MCF-7	breast:
2	chr10:89620982..89624449-chr10:89796720..89799905,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1556741	0.83[ASN][1000 genomes]
rs495149	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs507795	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs564443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs572474	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs575957	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs664317	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs666579	0.92[EUR][1000 genomes]
rs692788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs692942	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs806676	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89788800-89801400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:89793000-89799000	Weak transcription	A549	lung
3	chr10:89793200-89799200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:89793400-89798200	Weak transcription	Osteobl	bone
5	chr10:89794000-89801200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:89794200-89799400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:89795200-89798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:89795200-89798600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:89795400-89798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:89796400-89798200	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:89796800-89798200	Enhancers	Primary T cells from cord blood	blood
12	chr10:89796800-89798200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr10:89796800-89798800	Enhancers	Dnd41	blood
14	chr10:89797000-89798400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:89797200-89798000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr10:89797200-89798200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr10:89797200-89798200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr10:89797200-89798200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:89797200-89798400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:89797200-89798600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:89797200-89798600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr10:89797200-89798600	Enhancers	Thymus	Thymus
23	chr10:89797200-89798800	Enhancers	Fetal Thymus	thymus
24	chr10:89797200-89799800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:89797400-89797800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:89797400-89798400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr10:89797400-89798400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:89797400-89798400	Enhancers	Fetal Stomach	stomach
29	chr10:89797400-89798600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr10:89797400-89798800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:89797400-89799800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:89797400-89801800	Enhancers	NHLF	lung
33	chr10:89797600-89798600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr10:89797600-89798800	Enhancers	Muscle Satellite Cultured Cells	--
35	chr10:89797600-89800400	Enhancers	NH-A	brain
36	chr10:89797600-89801200	Weak transcription	Fetal Lung	lung
37	chr10:89797600-89801600	Enhancers	NHDF-Ad	bronchial

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