Variant report

Variant	rs666579
Chromosome Location	chr10:89812782-89812783
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs495149	0.92[EUR][1000 genomes]
rs507795	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs564443	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs572474	0.90[EUR][1000 genomes]
rs575957	0.90[EUR][1000 genomes]
rs621891	0.92[EUR][1000 genomes]
rs664317	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs692788	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs692942	0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs806676	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89802600-89822200	Weak transcription	Aorta	Aorta
2	chr10:89803400-89822000	Weak transcription	Psoas Muscle	Psoas
3	chr10:89812000-89816200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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