Variant report

Variant	rs62229728
Chromosome Location	chr21:15817516-15817517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11088043	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12482199	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12483041	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12626304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17274156	1.00[ASN][1000 genomes]
rs2142235	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178900	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62229703	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62229729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62229747	0.82[EUR][1000 genomes]
rs73171326	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8134274	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9975245	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9975290	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15816600-15819000	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links