Variant report

Variant	rs73171326
Chromosome Location	chr21:15824709-15824710
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11088043	0.92[EUR][1000 genomes]
rs12482199	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12626304	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2142235	0.89[EUR][1000 genomes]
rs2178900	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62229728	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62229729	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62229747	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62229750	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62229751	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8134274	0.92[EUR][1000 genomes]
rs9636579	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9636800	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9975245	0.92[EUR][1000 genomes]
rs9975290	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv966029	chr21:15818808-15833739	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15823000-15825000	Enhancers	GM12878-XiMat	blood
2	chr21:15823600-15826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:15823800-15827400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr21:15823800-15828000	Flanking Active TSS	K562	blood
5	chr21:15824000-15828000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr21:15824000-15828200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr21:15824000-15828600	Enhancers	Primary hematopoietic stem cells	blood
8	chr21:15824200-15828200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr21:15824400-15824800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr21:15824600-15825000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr21:15824600-15825000	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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