Variant report

Variant	rs62251538
Chromosome Location	chr3:60689812-60689813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11921025	0.94[EUR][1000 genomes]
rs11923145	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11923899	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11926456	0.94[EUR][1000 genomes]
rs11928674	0.94[EUR][1000 genomes]
rs13321532	0.94[EUR][1000 genomes]
rs17063781	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4393862	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4402886	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57004000	0.94[EUR][1000 genomes]
rs58195903	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58745931	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62249274	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62249304	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62251502	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62251532	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62251534	0.94[EUR][1000 genomes]
rs62251535	0.94[EUR][1000 genomes]
rs62251537	0.94[EUR][1000 genomes]
rs62251539	0.94[EUR][1000 genomes]
rs62251540	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62251541	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6446150	0.94[EUR][1000 genomes]
rs6772346	0.94[EUR][1000 genomes]
rs6789900	0.82[EUR][1000 genomes]
rs6793104	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6797892	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72875002	0.94[EUR][1000 genomes]
rs7618351	0.94[EUR][1000 genomes]
rs7636178	0.94[EUR][1000 genomes]
rs7638652	0.94[EUR][1000 genomes]
rs7638754	0.94[EUR][1000 genomes]
rs7641604	0.94[EUR][1000 genomes]
rs7642546	0.88[EUR][1000 genomes]
rs9311772	0.94[EUR][1000 genomes]
rs9311773	0.94[EUR][1000 genomes]
rs9810266	0.88[EUR][1000 genomes]
rs9811304	0.94[EUR][1000 genomes]
rs9814237	0.94[EUR][1000 genomes]
rs9816751	0.94[EUR][1000 genomes]
rs9816956	0.94[EUR][1000 genomes]
rs9818734	0.94[EUR][1000 genomes]
rs9824756	0.94[EUR][1000 genomes]
rs9826128	0.88[EUR][1000 genomes]
rs9826570	0.88[EUR][1000 genomes]
rs9827312	0.88[EUR][1000 genomes]
rs9827340	0.88[EUR][1000 genomes]
rs9828898	0.94[EUR][1000 genomes]
rs9830759	0.88[EUR][1000 genomes]
rs9832938	0.94[EUR][1000 genomes]
rs9834653	0.94[EUR][1000 genomes]
rs9838172	0.94[EUR][1000 genomes]
rs9838335	0.94[EUR][1000 genomes]
rs9838669	0.94[EUR][1000 genomes]
rs9839019	0.88[EUR][1000 genomes]
rs9839778	0.94[EUR][1000 genomes]
rs9840107	0.94[EUR][1000 genomes]
rs9840473	0.94[EUR][1000 genomes]
rs9844497	0.88[EUR][1000 genomes]
rs9845813	0.94[EUR][1000 genomes]
rs9861551	0.94[EUR][1000 genomes]
rs9861707	0.94[EUR][1000 genomes]
rs9866844	0.94[EUR][1000 genomes]
rs9868891	0.88[EUR][1000 genomes]
rs9872622	0.94[EUR][1000 genomes]
rs9874852	0.94[EUR][1000 genomes]
rs9875027	0.94[EUR][1000 genomes]
rs9876876	0.88[EUR][1000 genomes]
rs9878020	0.83[EUR][1000 genomes]
rs9878248	0.94[EUR][1000 genomes]
rs9878383	0.94[EUR][1000 genomes]
rs9881065	0.94[EUR][1000 genomes]
rs9882477	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60684400-60690000	Weak transcription	Right Ventricle	heart
2	chr3:60685800-60690400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:60689200-60690200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:60689800-60690400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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