Variant report

Variant	rs6446150
Chromosome Location	chr3:60684276-60684277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11130780	1.00[CEU][hapmap]
rs11921025	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923145	0.94[EUR][1000 genomes]
rs11923899	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11926456	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11928674	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13314853	0.82[AMR][1000 genomes]
rs13321532	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063781	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1716726	1.00[CEU][hapmap]
rs4393862	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4402886	0.88[EUR][1000 genomes]
rs57004000	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58195903	0.94[EUR][1000 genomes]
rs58745931	0.94[EUR][1000 genomes]
rs62249274	0.89[EUR][1000 genomes]
rs62249304	0.94[EUR][1000 genomes]
rs62251491	0.82[AMR][1000 genomes]
rs62251502	0.94[EUR][1000 genomes]
rs62251532	1.00[EUR][1000 genomes]
rs62251534	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251535	1.00[EUR][1000 genomes]
rs62251537	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251538	0.94[EUR][1000 genomes]
rs62251539	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251540	1.00[EUR][1000 genomes]
rs62251541	1.00[EUR][1000 genomes]
rs6772346	0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789900	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6793104	0.94[EUR][1000 genomes]
rs6797892	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs72872798	0.82[AMR][1000 genomes]
rs72875002	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7618351	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7636178	1.00[CEU][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7638652	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7638754	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641604	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642546	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9311772	1.00[CEU][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311773	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810266	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9811304	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814237	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816956	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818734	1.00[CEU][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9824756	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9826128	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9826570	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9827312	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9827340	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9827546	0.82[AMR][1000 genomes]
rs9828898	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830759	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9832938	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9834653	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838172	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838335	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838669	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9839019	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9839778	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840107	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840473	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844497	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9845813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861551	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861707	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866844	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9868891	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9872622	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874852	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9875027	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876876	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9878020	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9878248	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878383	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9881065	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882477	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60671400-60685600	Weak transcription	Pancreas	Pancrea
2	chr3:60681000-60685600	Weak transcription	Psoas Muscle	Psoas
3	chr3:60681400-60685600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:60682400-60685600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:60683200-60685200	Weak transcription	Liver	Liver
6	chr3:60683400-60684400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:60683400-60684400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:60683400-60684800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:60683600-60684400	Enhancers	Fetal Heart	heart
10	chr3:60683600-60684600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:60683600-60684600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:60683600-60684600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:60683600-60684800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:60683600-60685200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:60683800-60684400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:60684000-60684400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:60684200-60684400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:60684200-60684400	Enhancers	Right Ventricle	heart
19	chr3:60684200-60685600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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