Variant report

Variant	rs13314853
Chromosome Location	chr3:60654521-60654522
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11921025	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11922545	1.00[EUR][1000 genomes]
rs11926456	0.82[AMR][1000 genomes]
rs11928674	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13321532	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17063778	1.00[EUR][1000 genomes]
rs4402886	0.94[ASN][1000 genomes]
rs57004000	0.82[AMR][1000 genomes]
rs62249154	1.00[EUR][1000 genomes]
rs62249155	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251489	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251492	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251493	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62251494	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62251495	1.00[EUR][1000 genomes]
rs62251496	1.00[EUR][1000 genomes]
rs62251499	0.90[EUR][1000 genomes]
rs62251500	1.00[EUR][1000 genomes]
rs62251501	0.91[EUR][1000 genomes]
rs62251534	0.82[AMR][1000 genomes]
rs6446150	0.82[AMR][1000 genomes]
rs6784732	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6789900	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs72872798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636178	0.82[AMR][1000 genomes]
rs7638652	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7638754	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7641604	0.82[AMR][1000 genomes]
rs7642546	0.82[AMR][1000 genomes]
rs9810266	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9814237	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9818734	0.82[AMR][1000 genomes]
rs9824756	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9827546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830759	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9840473	0.82[AMR][1000 genomes]
rs9845813	0.82[AMR][1000 genomes]
rs9868891	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60642600-60655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60646200-60655000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:60653800-60654800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:60653800-60655000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:60653800-60660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:60654200-60655000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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