Variant report

Variant	rs62249155
Chromosome Location	chr3:60645504-60645505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11922545	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13314853	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17063778	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4402886	0.88[ASN][1000 genomes]
rs62249154	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251489	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251491	1.00[EUR][1000 genomes]
rs62251492	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251493	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251494	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251495	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251496	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251499	0.90[EUR][1000 genomes]
rs62251500	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251501	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6784732	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6793104	0.81[AFR][1000 genomes]
rs72872798	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9827546	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60640000-60645800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:60642600-60655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:60644000-60645600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:60645000-60646000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:60645000-60646200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:60645200-60646000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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