Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11922545	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11923899	0.83[AFR][1000 genomes]
rs13314853	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063778	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17063781	0.83[AFR][1000 genomes]
rs4402886	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs58745931	0.86[AFR][1000 genomes]
rs62249154	0.95[EUR][1000 genomes]
rs62249155	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251489	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251491	0.95[EUR][1000 genomes]
rs62251493	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62251494	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62251495	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62251496	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62251499	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62251500	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62251501	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62251502	0.83[AFR][1000 genomes]
rs62251532	0.86[AFR][1000 genomes]
rs6784732	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6793104	0.88[AFR][1000 genomes]
rs72872798	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9827546	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60642600-60655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:60646200-60655000	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: