Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11922545	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923899	1.00[ASN][1000 genomes]
rs13314853	0.90[EUR][1000 genomes]
rs17063778	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58745931	1.00[ASN][1000 genomes]
rs62249154	0.90[EUR][1000 genomes]
rs62249155	0.90[EUR][1000 genomes]
rs62251489	0.90[EUR][1000 genomes]
rs62251491	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251492	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62251493	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62251494	0.90[EUR][1000 genomes]
rs62251495	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251496	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251500	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251501	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251502	1.00[ASN][1000 genomes]
rs6784732	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6793104	1.00[ASN][1000 genomes]
rs72872798	0.90[EUR][1000 genomes]
rs7642546	1.00[ASN][1000 genomes]
rs9810266	1.00[ASN][1000 genomes]
rs9827546	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60653800-60660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:60654800-60659200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:60654800-60659200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:60656400-60660400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:60656400-60660400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:60657600-60659000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:60657800-60658400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:60657800-60659000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:60657800-60659200	Enhancers	HUES6 Cell Line	embryonic stem cell

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