Variant report

Variant	rs62251496
Chromosome Location	chr3:60657703-60657704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11922545	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11923899	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13314853	1.00[EUR][1000 genomes]
rs17063778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17063781	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58745931	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62249154	1.00[EUR][1000 genomes]
rs62249155	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251489	1.00[EUR][1000 genomes]
rs62251491	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251492	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62251493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251494	1.00[EUR][1000 genomes]
rs62251495	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251499	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251500	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251501	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62251502	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62251532	0.81[AFR][1000 genomes]
rs6784732	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6793104	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72872798	1.00[EUR][1000 genomes]
rs7642546	1.00[ASN][1000 genomes]
rs9810266	1.00[ASN][1000 genomes]
rs9827546	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60653800-60660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:60654800-60657800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:60654800-60659200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:60654800-60659200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:60655000-60657800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr3:60656400-60660400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:60656400-60660400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:60657000-60657800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:60657600-60657800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:60657600-60657800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:60657600-60659000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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