Variant report

Variant	rs9816751
Chromosome Location	chr3:60685668-60685669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11921025	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923145	0.94[EUR][1000 genomes]
rs11923899	0.94[EUR][1000 genomes]
rs11926456	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11928674	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13321532	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17063781	0.94[EUR][1000 genomes]
rs4393862	0.94[EUR][1000 genomes]
rs4402886	0.88[EUR][1000 genomes]
rs57004000	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58195903	0.94[EUR][1000 genomes]
rs58745931	0.94[EUR][1000 genomes]
rs62249274	0.89[EUR][1000 genomes]
rs62249304	0.94[EUR][1000 genomes]
rs62251502	0.94[EUR][1000 genomes]
rs62251532	1.00[EUR][1000 genomes]
rs62251534	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251535	1.00[EUR][1000 genomes]
rs62251537	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251538	0.94[EUR][1000 genomes]
rs62251539	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251540	1.00[EUR][1000 genomes]
rs62251541	1.00[EUR][1000 genomes]
rs6446150	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772346	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6789900	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6793104	0.94[EUR][1000 genomes]
rs6797892	0.94[EUR][1000 genomes]
rs72875002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7618351	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7636178	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7638652	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7638754	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7641604	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7642546	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9311772	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311773	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810266	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9811304	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9814237	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9816956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9818734	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9824756	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9826128	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9826570	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9827312	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9827340	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9828898	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9830759	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9832938	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9834653	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838172	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838335	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9838669	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9839019	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9839778	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840473	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9844497	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9845813	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861551	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9861707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9866844	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9868891	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9872622	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9874852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9875027	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9876876	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9878020	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9878248	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9878383	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9881065	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9882477	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60684400-60690000	Weak transcription	Right Ventricle	heart
2	chr3:60685600-60685800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr3:60685600-60685800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:60685600-60685800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:60685600-60685800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:60685600-60685800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
7	chr3:60685600-60685800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:60685600-60685800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr3:60685600-60685800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:60685600-60685800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:60685600-60685800	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr3:60685600-60685800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
13	chr3:60685600-60685800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:60685600-60685800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:60685600-60685800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:60685600-60685800	Flanking Bivalent TSS/Enh	Aorta	Aorta
17	chr3:60685600-60685800	Bivalent Enhancer	Liver	Liver
18	chr3:60685600-60685800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
19	chr3:60685600-60685800	ZNF genes & repeats	Esophagus	oesophagus
20	chr3:60685600-60685800	ZNF genes & repeats	Placenta	Placenta
21	chr3:60685600-60685800	Flanking Bivalent TSS/Enh	Gastric	stomach
22	chr3:60685600-60685800	ZNF genes & repeats	Left Ventricle	heart
23	chr3:60685600-60685800	ZNF genes & repeats	Lung	lung
24	chr3:60685600-60685800	ZNF genes & repeats	Ovary	ovary
25	chr3:60685600-60685800	ZNF genes & repeats	Pancreas	Pancrea
26	chr3:60685600-60685800	ZNF genes & repeats	Psoas Muscle	Psoas
27	chr3:60685600-60685800	ZNF genes & repeats	Right Atrium	heart
28	chr3:60685600-60685800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
29	chr3:60685600-60685800	ZNF genes & repeats	Small Intestine	intestine
30	chr3:60685600-60685800	Flanking Bivalent TSS/Enh	Spleen	Spleen

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