Variant report

Variant	rs62255838
Chromosome Location	chr3:24196293-24196294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24196174..24198881-chr3:24200287..24202945,2	MCF-7	breast:
2	chr3:24187851..24190710-chr3:24194476..24197652,3	K562	blood:
3	chr3:24195944..24197573-chr3:24200663..24202701,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs62253674	0.82[ASN][1000 genomes]
rs62253675	0.82[ASN][1000 genomes]
rs62253676	0.82[ASN][1000 genomes]
rs62253677	0.82[ASN][1000 genomes]
rs62253678	0.82[ASN][1000 genomes]
rs62253679	0.82[ASN][1000 genomes]
rs62253680	0.82[ASN][1000 genomes]
rs62253681	0.82[ASN][1000 genomes]
rs62253688	0.82[ASN][1000 genomes]
rs62253689	0.82[ASN][1000 genomes]
rs62253690	0.82[ASN][1000 genomes]
rs62253691	0.82[ASN][1000 genomes]
rs62253692	0.82[ASN][1000 genomes]
rs62253693	0.82[ASN][1000 genomes]
rs62255836	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255839	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255841	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62255848	0.91[ASN][1000 genomes]
rs62255850	0.91[ASN][1000 genomes]
rs73138659	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24167000-24197800	Weak transcription	K562	blood
2	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
3	chr3:24183400-24198000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
5	chr3:24187800-24197800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:24188000-24202200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:24188200-24196400	Weak transcription	Aorta	Aorta
8	chr3:24188200-24197200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:24188200-24201600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:24188200-24203400	Weak transcription	Right Atrium	heart
11	chr3:24188200-24203600	Weak transcription	Liver	Liver
12	chr3:24188200-24210000	Weak transcription	Gastric	stomach
13	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
14	chr3:24188400-24198000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:24189600-24198000	Weak transcription	NHLF	lung
16	chr3:24189600-24198600	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:24190600-24198000	Weak transcription	Fetal Intestine Small	intestine
18	chr3:24190800-24202400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:24191000-24198000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:24192400-24197200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:24192400-24198000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:24192800-24202200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:24193600-24196400	Weak transcription	HSMMtube	muscle
24	chr3:24194000-24197800	Weak transcription	Psoas Muscle	Psoas
25	chr3:24194000-24202200	Weak transcription	Fetal Lung	lung
26	chr3:24194000-24202200	Weak transcription	Ovary	ovary
27	chr3:24194000-24203000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:24195000-24198200	Enhancers	A549	lung
29	chr3:24195400-24197200	Weak transcription	Placenta	Placenta
30	chr3:24195400-24198200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:24195600-24196400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr3:24195600-24202200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:24195800-24196600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr3:24195800-24197400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:24195800-24198800	Enhancers	HSMM	muscle
36	chr3:24195800-24199200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:24196000-24196800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr3:24196000-24197000	Weak transcription	NHDF-Ad	bronchial
39	chr3:24196200-24198800	Enhancers	NHEK	skin
40	chr3:24196200-24201800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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