Variant report

Variant	rs62253680
Chromosome Location	chr3:24245789-24245790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17014338	1.00[EUR][1000 genomes]
rs62253674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253694	1.00[EUR][1000 genomes]
rs62253695	1.00[EUR][1000 genomes]
rs62253696	1.00[EUR][1000 genomes]
rs62253716	1.00[EUR][1000 genomes]
rs62253718	1.00[EUR][1000 genomes]
rs62253719	1.00[EUR][1000 genomes]
rs62253723	1.00[EUR][1000 genomes]
rs62255838	0.82[ASN][1000 genomes]
rs62255848	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255850	0.90[ASN][1000 genomes]
rs62255859	1.00[EUR][1000 genomes]
rs62256760	1.00[EUR][1000 genomes]
rs73138659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24227800-24254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24238400-24254000	Weak transcription	Aorta	Aorta
3	chr3:24239000-24268200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:24242000-24254000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:24243000-24254200	Weak transcription	Psoas Muscle	Psoas
6	chr3:24245000-24246000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:24245600-24246400	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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