Variant report

Variant	rs62255848
Chromosome Location	chr3:24214951-24214952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24209969..24211626-chr3:24213651..24216557,2	K562	blood:
2	chr3:24214802..24217658-chr3:24221574..24223336,2	K562	blood:
3	chr3:24214802..24217658-chr3:24221496..24225261,5	K562	blood:
4	chr3:24204352..24207923-chr3:24212608..24216820,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17014338	1.00[EUR][1000 genomes]
rs62253674	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253675	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253676	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253677	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253678	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253679	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253680	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253681	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253688	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253689	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253690	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253691	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253692	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253693	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62253694	1.00[EUR][1000 genomes]
rs62253695	1.00[EUR][1000 genomes]
rs62253696	1.00[EUR][1000 genomes]
rs62253716	1.00[EUR][1000 genomes]
rs62253718	1.00[EUR][1000 genomes]
rs62253719	1.00[EUR][1000 genomes]
rs62253723	1.00[EUR][1000 genomes]
rs62255836	0.83[ASN][1000 genomes]
rs62255838	0.91[ASN][1000 genomes]
rs62255839	0.83[ASN][1000 genomes]
rs62255841	0.83[ASN][1000 genomes]
rs62255850	1.00[ASN][1000 genomes]
rs62255859	1.00[EUR][1000 genomes]
rs62256760	1.00[EUR][1000 genomes]
rs73138659	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7644151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
3	chr3:24198800-24218800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:24199400-24225800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:24202400-24218000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:24203600-24218600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:24207000-24222200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:24207000-24227000	Weak transcription	Left Ventricle	heart
9	chr3:24211000-24216200	Weak transcription	K562	blood
10	chr3:24211600-24225800	Weak transcription	Psoas Muscle	Psoas
11	chr3:24211800-24216400	Weak transcription	Aorta	Aorta
12	chr3:24213400-24215200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:24213800-24218600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:24214000-24215200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:24214000-24215200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr3:24214000-24215400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:24214000-24215400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:24214200-24215000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:24214200-24215000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:24214200-24215200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr3:24214200-24215200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:24214200-24215400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:24214600-24215400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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