Variant report

Variant	rs73138659
Chromosome Location	chr3:24226984-24226985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24226799..24228075-chr3:24279198..24280289,8	MCF-7	breast:
2	chr3:24225359..24227468-chr3:24534115..24535866,2	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17014338	1.00[EUR][1000 genomes]
rs62253674	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253677	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253679	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253694	1.00[EUR][1000 genomes]
rs62253695	1.00[EUR][1000 genomes]
rs62253696	1.00[EUR][1000 genomes]
rs62253716	1.00[EUR][1000 genomes]
rs62253718	1.00[EUR][1000 genomes]
rs62253719	1.00[EUR][1000 genomes]
rs62253723	1.00[EUR][1000 genomes]
rs62255838	0.82[ASN][1000 genomes]
rs62255848	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62255850	0.90[ASN][1000 genomes]
rs62255859	1.00[EUR][1000 genomes]
rs62256760	1.00[EUR][1000 genomes]
rs7644151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3384500	chr3:24224448-24227746	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24207000-24227000	Weak transcription	Left Ventricle	heart
3	chr3:24218600-24227400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:24219200-24227000	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:24219800-24227200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:24222400-24227200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:24223200-24227200	Weak transcription	Pancreas	Pancrea
8	chr3:24223200-24234400	Weak transcription	HepG2	liver
9	chr3:24223400-24227400	Weak transcription	Stomach Mucosa	stomach
10	chr3:24223400-24233400	Weak transcription	Liver	Liver
11	chr3:24223800-24227200	Weak transcription	Fetal Heart	heart
12	chr3:24224000-24227200	Weak transcription	Placenta	Placenta
13	chr3:24224400-24227000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr3:24224800-24227200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:24224800-24227200	Weak transcription	Right Atrium	heart
16	chr3:24225000-24232800	Weak transcription	Fetal Lung	lung
17	chr3:24225800-24227600	Strong transcription	Fetal Intestine Small	intestine
18	chr3:24225800-24227800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:24225800-24228000	Enhancers	Psoas Muscle	Psoas
20	chr3:24225800-24228200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:24226000-24227200	Weak transcription	Right Ventricle	heart
22	chr3:24226000-24228800	Enhancers	NHDF-Ad	bronchial
23	chr3:24226200-24227200	Weak transcription	Brain Angular Gyrus	brain
24	chr3:24226200-24227200	Enhancers	K562	blood
25	chr3:24226200-24227800	Enhancers	Adipose Nuclei	Adipose
26	chr3:24226400-24230000	Weak transcription	Aorta	Aorta

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