Variant report

Variant	rs62255859
Chromosome Location	chr3:24222520-24222521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17014338	1.00[EUR][1000 genomes]
rs62253674	1.00[EUR][1000 genomes]
rs62253675	1.00[EUR][1000 genomes]
rs62253676	1.00[EUR][1000 genomes]
rs62253677	1.00[EUR][1000 genomes]
rs62253678	1.00[EUR][1000 genomes]
rs62253679	1.00[EUR][1000 genomes]
rs62253680	1.00[EUR][1000 genomes]
rs62253681	1.00[EUR][1000 genomes]
rs62253688	1.00[EUR][1000 genomes]
rs62253689	1.00[EUR][1000 genomes]
rs62253690	1.00[EUR][1000 genomes]
rs62253691	1.00[EUR][1000 genomes]
rs62253692	1.00[EUR][1000 genomes]
rs62253693	1.00[EUR][1000 genomes]
rs62253694	1.00[EUR][1000 genomes]
rs62253695	1.00[EUR][1000 genomes]
rs62253696	1.00[EUR][1000 genomes]
rs62253716	1.00[EUR][1000 genomes]
rs62253718	1.00[EUR][1000 genomes]
rs62253719	1.00[EUR][1000 genomes]
rs62253723	1.00[EUR][1000 genomes]
rs62255848	1.00[EUR][1000 genomes]
rs62256760	1.00[EUR][1000 genomes]
rs73138659	1.00[EUR][1000 genomes]
rs7644151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv3733	chr3:24216577-24261749	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24199400-24225800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:24207000-24227000	Weak transcription	Left Ventricle	heart
4	chr3:24211600-24225800	Weak transcription	Psoas Muscle	Psoas
5	chr3:24216600-24226200	Weak transcription	K562	blood
6	chr3:24217000-24223800	Weak transcription	Aorta	Aorta
7	chr3:24218600-24227400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:24218800-24225800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:24219200-24223000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:24219200-24227000	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:24219400-24226000	Weak transcription	NHDF-Ad	bronchial
12	chr3:24219800-24227200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:24222000-24223200	Enhancers	Pancreas	Pancrea
14	chr3:24222200-24223400	Enhancers	Liver	Liver
15	chr3:24222400-24227200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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