Variant report

Variant rs62253694
Chromosome Location chr3:24254776-24254777
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:24239000-24268200 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr3:24246000-24260400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr3:24246400-24264400 Weak transcription Fetal Intestine Small intestine
4 chr3:24251400-24279200 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr3:24252000-24255800 Enhancers Skeletal Muscle Male skeletal muscle
6 chr3:24252000-24257800 Enhancers Skeletal Muscle Female skeletal muscle
7 chr3:24252200-24262000 Weak transcription Fetal Intestine Large intestine
8 chr3:24252400-24276400 Weak transcription HepG2 liver
9 chr3:24252800-24256200 Enhancers Colon Smooth Muscle Colon
10 chr3:24253000-24255600 Enhancers Rectal Smooth Muscle rectum
11 chr3:24253200-24255800 Enhancers NHDF-Ad bronchial
12 chr3:24253800-24254800 Enhancers Left Ventricle heart
13 chr3:24253800-24255600 Enhancers Fetal Stomach stomach
14 chr3:24253800-24255800 Enhancers Fetal Muscle Leg muscle
15 chr3:24254000-24254800 Enhancers Brain Hippocampus Middle brain
16 chr3:24254000-24254800 Enhancers HSMM muscle
17 chr3:24254000-24255000 Enhancers Adipose Nuclei Adipose
18 chr3:24254000-24255000 Enhancers Brain Anterior Caudate brain
19 chr3:24254000-24255200 Enhancers HSMMtube muscle
20 chr3:24254000-24255400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr3:24254000-24255800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr3:24254000-24255800 Enhancers Brain Angular Gyrus brain
23 chr3:24254000-24256200 Enhancers Aorta Aorta
24 chr3:24254000-24256200 Enhancers Ovary ovary
25 chr3:24254000-24256400 Enhancers Breast Myoepithelial Primary Cells Breast
26 chr3:24254200-24254800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr3:24254200-24254800 Enhancers Cortex derived primary cultured neurospheres brain
28 chr3:24254200-24254800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr3:24254200-24254800 Enhancers Brain Germinal Matrix brain
30 chr3:24254200-24254800 Enhancers Brain Inferior Temporal Lobe brain
31 chr3:24254200-24254800 Enhancers HMEC breast
32 chr3:24254200-24255000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
33 chr3:24254200-24255000 Enhancers Brain Cingulate Gyrus brain
34 chr3:24254200-24255000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
35 chr3:24254200-24255000 Enhancers Stomach Mucosa stomach
36 chr3:24254200-24255200 Enhancers Brain Substantia Nigra brain
37 chr3:24254200-24255200 Enhancers Fetal Lung lung
38 chr3:24254200-24255400 Enhancers Duodenum Smooth Muscle Duodenum
39 chr3:24254200-24255400 Flanking Active TSS Stomach Smooth Muscle stomach
40 chr3:24254200-24256200 Enhancers Psoas Muscle Psoas
41 chr3:24254200-24257400 Enhancers Pancreas Pancrea
42 chr3:24254400-24254800 Bivalent Enhancer Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr3:24254400-24255800 Enhancers Right Atrium heart
44 chr3:24254600-24260000 Weak transcription NHEK skin

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