Variant report

Variant	rs62270398
Chromosome Location	chr3:159555025-159555026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr3:159554734-159555144	A549	lung:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
2	JUND	chr3:159554546-159555271	SK-N-SH	brain:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
3	STAT3	chr3:159554724-159555089	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:159554686-159555061	MCF10A-Er-Src	breast:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554839-159554850 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
5	GATA3	chr3:159554553-159555405	SK-N-SH	brain:	n/a	chr3:159555151-159555158 chr3:159555151-159555158 chr3:159554577-159554598 chr3:159555151-159555158 chr3:159555150-159555160 chr3:159555151-159555160 chr3:159555151-159555160
6	EP300	chr3:159554629-159555216	SK-N-SH_RA	brain:	n/a	chr3:159554840-159554849 chr3:159554936-159554950
7	STAT3	chr3:159554719-159555107	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr3:159554656-159555061	MCF10A-Er-Src	breast:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554839-159554850 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
9	MEF2A	chr3:159554443-159555214	SK-N-SH	brain:	n/a	chr3:159554855-159554864 chr3:159554841-159554849 chr3:159554850-159554871 chr3:159555032-159555040
10	POLR2A	chr3:159554547-159555290	HUVEC	blood vessel:	n/a	n/a
11	EP300	chr3:159554669-159555207	SK-N-SH_RA	brain:	n/a	chr3:159554840-159554849 chr3:159554936-159554950
12	MYC	chr3:159554753-159555061	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr3:159554687-159555060	MCF10A-Er-Src	breast:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554839-159554850 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
14	TCF12	chr3:159554531-159555405	SK-N-SH	brain:	n/a	n/a
15	STAT3	chr3:159554766-159555076	MCF10A-Er-Src	breast:	n/a	n/a
16	PBX3	chr3:159554581-159555266	SK-N-SH	brain:	n/a	n/a
17	POLR2A	chr3:159554815-159555037	MCF10A-Er-Src	breast:	n/a	n/a
18	EP300	chr3:159554621-159555246	SK-N-SH	brain:	n/a	chr3:159554840-159554849 chr3:159554936-159554950
19	FOSL2	chr3:159554580-159555213	SK-N-SH	brain:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
20	FOS	chr3:159554656-159555045	MCF10A-Er-Src	breast:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554839-159554850 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
21	MYC	chr3:159554597-159555120	MCF10A-Er-Src	breast:	n/a	n/a
22	STAT3	chr3:159554714-159555094	MCF10A-Er-Src	breast:	n/a	n/a
23	TCF12	chr3:159554462-159555385	SK-N-SH	brain:	n/a	n/a
24	FOS	chr3:159554632-159555044	HUVEC	blood vessel:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554839-159554850 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
25	POLR2A	chr3:159554687-159555144	SK-N-SH	brain:	n/a	n/a
26	GATA3	chr3:159554570-159555325	SK-N-SH	brain:	n/a	chr3:159555151-159555158 chr3:159555151-159555158 chr3:159554577-159554598 chr3:159555151-159555158 chr3:159555150-159555160 chr3:159555151-159555160 chr3:159555151-159555160
27	MEF2A	chr3:159554680-159555233	SK-N-SH	brain:	n/a	chr3:159554855-159554864 chr3:159554841-159554849 chr3:159554850-159554871 chr3:159555032-159555040
28	JUND	chr3:159554538-159555221	SK-N-SH	brain:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849
29	PBX3	chr3:159554628-159555293	SK-N-SH	brain:	n/a	n/a
30	JUN	chr3:159554645-159555080	HUVEC	blood vessel:	n/a	chr3:159554841-159554849 chr3:159554837-159554848 chr3:159554840-159554850 chr3:159554841-159554849 chr3:159554840-159554850 chr3:159554842-159554849

Variant related genes	Relation type
SCHIP1	TF binding region

rs_ID	r²[population]
rs16830774	0.84[EUR][1000 genomes]
rs1846130	1.00[EUR][1000 genomes]
rs62270376	0.84[EUR][1000 genomes]
rs62270378	0.84[EUR][1000 genomes]
rs62270380	0.84[EUR][1000 genomes]
rs62270382	0.84[EUR][1000 genomes]
rs62270384	0.84[EUR][1000 genomes]
rs62270385	0.84[EUR][1000 genomes]
rs62270386	0.84[EUR][1000 genomes]
rs62270388	0.84[EUR][1000 genomes]
rs62270391	0.84[EUR][1000 genomes]
rs62270394	0.84[EUR][1000 genomes]
rs62270396	1.00[EUR][1000 genomes]
rs62270399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62270402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762494	0.93[EUR][1000 genomes]
rs6762595	0.84[EUR][1000 genomes]
rs6767193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6770054	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6771235	0.84[EUR][1000 genomes]
rs7637455	0.84[EUR][1000 genomes]

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:159543800-159555200	Weak transcription	Lung	lung
3	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
4	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
5	chr3:159548600-159555200	Weak transcription	Left Ventricle	heart
6	chr3:159549000-159555200	Weak transcription	Right Atrium	heart
7	chr3:159549000-159555200	Weak transcription	Right Ventricle	heart
8	chr3:159549000-159555600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:159550200-159557600	Weak transcription	Primary B cells from cord blood	blood
10	chr3:159550200-159557600	Weak transcription	Spleen	Spleen
11	chr3:159550600-159555600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
13	chr3:159551800-159557600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:159551800-159557600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:159552800-159557400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:159552800-159557800	Enhancers	HUVEC	blood vessel
17	chr3:159553000-159556200	Enhancers	Colon Smooth Muscle	Colon
18	chr3:159553200-159557400	Enhancers	Rectal Smooth Muscle	rectum
19	chr3:159553600-159556000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:159553600-159556000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:159553600-159556000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:159553600-159556000	Enhancers	NHDF-Ad	bronchial
23	chr3:159553800-159555800	Enhancers	Fetal Heart	heart
24	chr3:159553800-159556000	Enhancers	Brain Cingulate Gyrus	brain
25	chr3:159553800-159556000	Enhancers	HSMMtube	muscle
26	chr3:159554000-159555800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:159554000-159556000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:159554000-159556000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:159554000-159556000	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr3:159554000-159556000	Enhancers	Fetal Stomach	stomach
31	chr3:159554000-159556000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr3:159554000-159556000	Enhancers	Stomach Smooth Muscle	stomach
33	chr3:159554000-159556000	Enhancers	HSMM	muscle
34	chr3:159554000-159557200	Enhancers	Brain Angular Gyrus	brain
35	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr3:159554000-159557400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:159554000-159557400	Enhancers	Brain Hippocampus Middle	brain
38	chr3:159554000-159557400	Enhancers	Brain Substantia Nigra	brain
39	chr3:159554200-159555400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:159554200-159555800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:159554200-159555800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:159554200-159555800	Enhancers	Muscle Satellite Cultured Cells	--
43	chr3:159554200-159555800	Enhancers	Adipose Nuclei	Adipose
44	chr3:159554200-159555800	Enhancers	NH-A	brain
45	chr3:159554200-159555800	Enhancers	Osteobl	bone
46	chr3:159554200-159556000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr3:159554200-159556000	Enhancers	Hela-S3	cervix
48	chr3:159554200-159556400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:159554200-159556400	Enhancers	HMEC	breast
50	chr3:159554200-159557000	Enhancers	Brain Anterior Caudate	brain

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