Variant report

Variant	rs6770054
Chromosome Location	chr3:159549003-159549004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159546339..159549535-chr3:159550770..159553340,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16830774	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes]
rs1846130	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs62270376	0.94[EUR][1000 genomes]
rs62270378	0.94[EUR][1000 genomes]
rs62270380	0.94[EUR][1000 genomes]
rs62270382	0.94[EUR][1000 genomes]
rs62270384	0.94[EUR][1000 genomes]
rs62270385	0.94[EUR][1000 genomes]
rs62270386	0.94[EUR][1000 genomes]
rs62270388	0.94[EUR][1000 genomes]
rs62270391	0.94[EUR][1000 genomes]
rs62270393	0.81[ASN][1000 genomes]
rs62270394	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62270396	0.90[EUR][1000 genomes]
rs62270398	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62270399	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62270402	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6762494	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6762595	0.94[EUR][1000 genomes]
rs6767193	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6771235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes]
rs7637455	0.94[EUR][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159542200-159554200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:159543600-159555200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:159543800-159555200	Weak transcription	Lung	lung
4	chr3:159546200-159552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:159546400-159549400	Enhancers	HMEC	breast
6	chr3:159546400-159551800	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:159546400-159551800	Enhancers	Brain Hippocampus Middle	brain
8	chr3:159546400-159552000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:159546400-159552000	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:159546400-159552000	Enhancers	Brain Substantia Nigra	brain
11	chr3:159546800-159549200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr3:159546800-159549600	Enhancers	NHDF-Ad	bronchial
13	chr3:159547000-159557400	Weak transcription	Fetal Kidney	kidney
14	chr3:159547200-159549800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:159547400-159549800	Weak transcription	Stomach Mucosa	stomach
16	chr3:159547600-159549200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:159547600-159549200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr3:159547600-159549800	Weak transcription	Fetal Intestine Large	intestine
19	chr3:159547600-159549800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:159547600-159550400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:159547600-159551000	Weak transcription	Aorta	Aorta
22	chr3:159547600-159552800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:159547800-159556800	Weak transcription	Brain Germinal Matrix	brain
24	chr3:159548000-159549200	Enhancers	HSMM	muscle
25	chr3:159548000-159549600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:159548200-159549200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:159548200-159550000	Enhancers	Fetal Muscle Leg	muscle
28	chr3:159548200-159550600	Enhancers	Brain Angular Gyrus	brain
29	chr3:159548400-159549600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:159548600-159549200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr3:159548600-159549200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr3:159548600-159551000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:159548600-159554000	Weak transcription	Fetal Stomach	stomach
34	chr3:159548600-159554200	Weak transcription	Hela-S3	cervix
35	chr3:159548600-159555000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr3:159548600-159555200	Weak transcription	Left Ventricle	heart
37	chr3:159548800-159549600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr3:159548800-159551200	Enhancers	Thymus	Thymus
39	chr3:159548800-159552800	Weak transcription	HUVEC	blood vessel
40	chr3:159548800-159554000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr3:159548800-159554200	Weak transcription	Adipose Nuclei	Adipose
42	chr3:159548800-159554200	Weak transcription	NH-A	brain
43	chr3:159548800-159554400	Weak transcription	NHEK	skin
44	chr3:159549000-159549800	Weak transcription	Spleen	Spleen
45	chr3:159549000-159550000	Weak transcription	Colon Smooth Muscle	Colon
46	chr3:159549000-159550000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr3:159549000-159550800	Enhancers	Brain Anterior Caudate	brain
48	chr3:159549000-159552600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:159549000-159553000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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