Variant report

Variant rs62270402
Chromosome Location chr3:159571850-159571851
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:159558000-159575000 Weak transcription Gastric stomach
2 chr3:159567600-159572200 Weak transcription Ovary ovary
3 chr3:159568800-159576800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr3:159569000-159573000 Enhancers Fetal Brain Male brain
5 chr3:159569000-159573200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr3:159569200-159573000 Enhancers HUES48 Cell Line embryonic stem cell
7 chr3:159569400-159572800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
8 chr3:159569600-159577800 Weak transcription Colonic Mucosa Colon
9 chr3:159569600-159578400 Weak transcription H9 Cell Line embryonic stem cell
10 chr3:159570000-159572600 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
11 chr3:159570200-159572400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr3:159570200-159572600 Flanking Active TSS Muscle Satellite Cultured Cells --
13 chr3:159570200-159575200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr3:159570200-159576800 Active TSS Right Ventricle heart
15 chr3:159570400-159572000 Enhancers Placenta Amnion Placenta Amnion
16 chr3:159570400-159573000 Active TSS Aorta Aorta
17 chr3:159570400-159573200 Flanking Active TSS HUVEC blood vessel
18 chr3:159570600-159573400 Active TSS Psoas Muscle Psoas
19 chr3:159570800-159574800 Weak transcription Thymus Thymus
20 chr3:159570800-159576000 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr3:159570800-159578000 Weak transcription ES-WA7 Cell Line embryonic stem cell
22 chr3:159571000-159572200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
23 chr3:159571000-159572200 Weak transcription Hela-S3 cervix
24 chr3:159571000-159572800 Active TSS Duodenum Smooth Muscle Duodenum
25 chr3:159571000-159573000 Active TSS Left Ventricle heart
26 chr3:159571000-159573800 Weak transcription Lung lung
27 chr3:159571000-159574800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr3:159571000-159577800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
29 chr3:159571200-159572200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr3:159571200-159572200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr3:159571200-159572200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr3:159571200-159572200 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr3:159571200-159572200 Active TSS Fetal Muscle Leg muscle
34 chr3:159571200-159572200 Weak transcription Placenta Placenta
35 chr3:159571200-159572200 Active TSS Fetal Stomach stomach
36 chr3:159571200-159572200 Weak transcription Rectal Mucosa Donor 31 rectum
37 chr3:159571200-159572200 Enhancers Rectal Smooth Muscle rectum
38 chr3:159571200-159572200 Weak transcription GM12878-XiMat blood
39 chr3:159571200-159572400 Enhancers Fetal Intestine Large intestine
40 chr3:159571200-159572400 Active TSS Skeletal Muscle Female skeletal muscle
41 chr3:159571200-159572800 ZNF genes & repeats Fetal Heart heart
42 chr3:159571200-159573000 Active TSS Fetal Muscle Trunk muscle
43 chr3:159571200-159573200 Enhancers HUES64 Cell Line embryonic stem cell
44 chr3:159571200-159573200 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr3:159571200-159573200 Active TSS Stomach Smooth Muscle stomach
46 chr3:159571200-159573400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr3:159571200-159573800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr3:159571200-159573800 Active TSS Skeletal Muscle Male skeletal muscle
49 chr3:159571200-159573800 Weak transcription Spleen Spleen
50 chr3:159571200-159574000 Enhancers Brain Germinal Matrix brain

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