Variant report

Variant	rs62282743
Chromosome Location	chr3:150676359-150676360
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12107635	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12485344	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16863118	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16863121	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs358972	0.87[ASN][1000 genomes]
rs4434182	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62282751	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62284766	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62284768	0.84[ASN][1000 genomes]
rs7625786	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7628902	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7647641	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7647988	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150675400-150678400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:150676200-150676400	Bivalent Enhancer	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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