Variant report

Variant	rs7625786
Chromosome Location	chr3:150683856-150683857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12107625	0.85[EUR][1000 genomes]
rs12107635	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12485344	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12497559	0.81[EUR][1000 genomes]
rs16863118	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16863121	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1876746	0.84[EUR][1000 genomes]
rs358972	0.93[ASN][1000 genomes]
rs3796242	0.81[EUR][1000 genomes]
rs4434182	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55920295	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55990585	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61104836	0.81[EUR][1000 genomes]
rs62282743	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62282747	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62282751	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62282752	0.83[EUR][1000 genomes]
rs62282753	0.85[EUR][1000 genomes]
rs62284766	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62284768	0.90[ASN][1000 genomes]
rs744669	0.84[EUR][1000 genomes]
rs744670	0.84[EUR][1000 genomes]
rs7617623	0.82[EUR][1000 genomes]
rs7625985	0.85[EUR][1000 genomes]
rs7647641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7647988	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150683400-150685600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:150683600-150685400	Weak transcription	NHDF-Ad	bronchial
3	chr3:150683800-150684600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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