Variant report

Variant	rs62284768
Chromosome Location	chr3:150706216-150706217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12107635	0.90[ASN][1000 genomes]
rs12485344	0.94[ASN][1000 genomes]
rs16863118	0.95[ASN][1000 genomes]
rs16863121	0.94[ASN][1000 genomes]
rs358972	0.93[ASN][1000 genomes]
rs4434182	0.89[ASN][1000 genomes]
rs62282743	0.84[ASN][1000 genomes]
rs62282751	0.89[ASN][1000 genomes]
rs62284766	0.95[ASN][1000 genomes]
rs7625786	0.90[ASN][1000 genomes]
rs7647641	0.90[ASN][1000 genomes]
rs7647988	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150694400-150707000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:150694600-150709200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:150701000-150707600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:150704200-150706600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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