Variant report

Variant	rs62373412
Chromosome Location	chr5:124900931-124900932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10076374	0.96[EUR][1000 genomes]
rs13157757	1.00[EUR][1000 genomes]
rs13167694	0.85[EUR][1000 genomes]
rs13167816	0.85[EUR][1000 genomes]
rs1598817	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2220621	1.00[EUR][1000 genomes]
rs59771425	0.85[EUR][1000 genomes]
rs60163815	0.81[EUR][1000 genomes]
rs60696888	1.00[EUR][1000 genomes]
rs61202049	0.81[EUR][1000 genomes]
rs62373366	0.85[EUR][1000 genomes]
rs62373367	0.85[EUR][1000 genomes]
rs62373368	0.85[EUR][1000 genomes]
rs62373384	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373385	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62373387	0.92[EUR][1000 genomes]
rs62373389	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62373391	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62373392	1.00[EUR][1000 genomes]
rs62373414	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6899200	0.81[EUR][1000 genomes]
rs7710810	1.00[EUR][1000 genomes]
rs7717300	0.96[EUR][1000 genomes]
rs7728701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882827	chr5:124867823-124943901	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv882828	chr5:124867823-124958205	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv4986	chr5:124899753-124944916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124895800-124908400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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