Variant report

Variant	rs62401882
Chromosome Location	chr6:45782160-45782161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1020484	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17216374	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17216395	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17288516	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2122285	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2122286	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2396558	0.82[AMR][1000 genomes]
rs59247476	0.89[AMR][1000 genomes]
rs62401877	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62401878	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62401880	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62401881	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62401883	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62401884	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6918532	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9463123	0.82[AMR][1000 genomes]
rs9472574	0.82[AMR][1000 genomes]
rs9472585	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45780400-45782200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:45781200-45783000	Weak transcription	Fetal Lung	lung
3	chr6:45781200-45783400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:45781200-45783800	Weak transcription	Fetal Kidney	kidney
5	chr6:45781400-45783200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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