Variant report

Variant	rs62401880
Chromosome Location	chr6:45775941-45775942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1020484	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498764	0.90[ASN][1000 genomes]
rs17216374	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17216395	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17288516	0.89[AMR][1000 genomes]
rs2122285	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122286	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2396558	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59059903	0.90[ASN][1000 genomes]
rs59247476	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59418367	0.84[ASN][1000 genomes]
rs60316347	0.90[ASN][1000 genomes]
rs62401877	0.89[AMR][1000 genomes]
rs62401878	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62401881	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62401882	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62401883	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62401884	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6906422	0.90[ASN][1000 genomes]
rs6918532	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9463121	1.00[ASN][1000 genomes]
rs9463122	1.00[ASN][1000 genomes]
rs9463123	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9463124	1.00[ASN][1000 genomes]
rs9472574	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9472576	1.00[ASN][1000 genomes]
rs9472577	1.00[ASN][1000 genomes]
rs9472578	1.00[ASN][1000 genomes]
rs9472579	1.00[ASN][1000 genomes]
rs9472585	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45763600-45780600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:45768200-45776000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:45774000-45777600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:45774000-45778000	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:45774400-45776400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr6:45775000-45777200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:45775400-45776400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:45775400-45777200	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:45775400-45777200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:45775400-45777600	Enhancers	Primary B cells from cord blood	blood
11	chr6:45775600-45776200	Enhancers	NHDF-Ad	bronchial
12	chr6:45775600-45776400	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:45775800-45776800	Enhancers	HSMMtube	muscle
14	chr6:45775800-45777200	Enhancers	HSMM	muscle
15	chr6:45775800-45780600	Weak transcription	Fetal Kidney	kidney

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