Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1020484	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10498764	0.87[ASN][1000 genomes]
rs17216374	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17216395	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17288516	0.86[AMR][1000 genomes]
rs2122285	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2122286	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2396558	0.97[ASN][1000 genomes]
rs59059903	0.87[ASN][1000 genomes]
rs59247476	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59418367	0.87[ASN][1000 genomes]
rs60316347	0.87[ASN][1000 genomes]
rs62401877	0.86[AMR][1000 genomes]
rs62401878	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62401880	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62401881	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62401882	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62401883	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6906422	0.93[ASN][1000 genomes]
rs6918532	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9463121	0.97[ASN][1000 genomes]
rs9463122	0.97[ASN][1000 genomes]
rs9463123	0.97[ASN][1000 genomes]
rs9463124	0.97[ASN][1000 genomes]
rs9472574	0.97[ASN][1000 genomes]
rs9472576	0.97[ASN][1000 genomes]
rs9472577	0.97[ASN][1000 genomes]
rs9472578	0.97[ASN][1000 genomes]
rs9472579	0.97[ASN][1000 genomes]
rs9472585	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45783000-45784600	Enhancers	Fetal Lung	lung
2	chr6:45783800-45786800	Enhancers	Fetal Kidney	kidney
3	chr6:45784200-45784400	Enhancers	Osteobl	bone
4	chr6:45784200-45785000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:45784200-45785000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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