Variant report

Variant	rs59418367
Chromosome Location	chr6:45788951-45788952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1020484	0.84[ASN][1000 genomes]
rs1338468	1.00[EUR][1000 genomes]
rs2122285	0.84[ASN][1000 genomes]
rs2122286	0.84[ASN][1000 genomes]
rs2396558	0.84[ASN][1000 genomes]
rs58075690	1.00[EUR][1000 genomes]
rs60072106	1.00[EUR][1000 genomes]
rs60643594	1.00[EUR][1000 genomes]
rs62401878	0.84[ASN][1000 genomes]
rs62401880	0.84[ASN][1000 genomes]
rs62401881	0.84[ASN][1000 genomes]
rs62401884	0.87[ASN][1000 genomes]
rs6906422	0.93[ASN][1000 genomes]
rs6918532	0.84[ASN][1000 genomes]
rs73454889	1.00[EUR][1000 genomes]
rs73735485	1.00[EUR][1000 genomes]
rs73735486	1.00[EUR][1000 genomes]
rs73735487	1.00[EUR][1000 genomes]
rs73735489	1.00[EUR][1000 genomes]
rs73738315	1.00[EUR][1000 genomes]
rs73738316	1.00[EUR][1000 genomes]
rs7760252	1.00[EUR][1000 genomes]
rs9463121	0.84[ASN][1000 genomes]
rs9463122	0.84[ASN][1000 genomes]
rs9463123	0.84[ASN][1000 genomes]
rs9463124	0.84[ASN][1000 genomes]
rs9472574	0.84[ASN][1000 genomes]
rs9472576	0.84[ASN][1000 genomes]
rs9472577	0.84[ASN][1000 genomes]
rs9472578	0.84[ASN][1000 genomes]
rs9472579	0.84[ASN][1000 genomes]
rs9472585	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45787200-45790000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:45788400-45789800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:45788400-45791200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:45788600-45789800	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:45788600-45791400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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