Variant report

Variant	rs73738315
Chromosome Location	chr6:45938331-45938332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1338468	1.00[EUR][1000 genomes]
rs2022420	1.00[EUR][1000 genomes]
rs58075690	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59418367	1.00[EUR][1000 genomes]
rs60072106	1.00[EUR][1000 genomes]
rs73454889	1.00[EUR][1000 genomes]
rs73735485	1.00[EUR][1000 genomes]
rs73735486	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73735487	1.00[EUR][1000 genomes]
rs73735489	1.00[EUR][1000 genomes]
rs73738316	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7760252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45933600-45941400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr6:45934400-45938600	Enhancers	Right Atrium	heart
4	chr6:45935000-45938400	Weak transcription	Lung	lung
5	chr6:45936000-45941200	Enhancers	Fetal Heart	heart
6	chr6:45936800-45938600	Enhancers	Left Ventricle	heart
7	chr6:45936800-45938600	Enhancers	Ovary	ovary
8	chr6:45936800-45942000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:45937000-45940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:45937200-45938400	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr6:45937400-45938600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:45937400-45938600	Enhancers	Psoas Muscle	Psoas
13	chr6:45937600-45938400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:45937600-45938600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:45937600-45938600	Enhancers	Fetal Muscle Leg	muscle
16	chr6:45937600-45938600	Enhancers	Fetal Thymus	thymus
17	chr6:45937600-45938800	Genic enhancers	Fetal Intestine Small	intestine
18	chr6:45937600-45939000	Enhancers	Primary T cells from cord blood	blood
19	chr6:45937600-45939000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:45937600-45941600	Enhancers	Right Ventricle	heart
21	chr6:45937800-45938600	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:45937800-45938600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:45937800-45938600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:45937800-45938600	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:45937800-45938800	Enhancers	Fetal Intestine Large	intestine
26	chr6:45937800-45939400	Enhancers	Adipose Nuclei	Adipose
27	chr6:45938000-45938400	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:45938000-45938600	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr6:45938000-45938600	Enhancers	Colonic Mucosa	Colon
30	chr6:45938000-45939400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:45938000-45939400	Enhancers	Small Intestine	intestine
32	chr6:45938200-45938600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:45938200-45938600	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:45938200-45938800	Enhancers	Primary T helper cells fromperipheralblood	blood

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