Variant report

Variant	rs73735487
Chromosome Location	chr6:45898574-45898575
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45897955..45898801-chr6:46057521..46058514,3	MCF-7	breast:
2	chr6:45897904..45898920-chr6:46377652..46378792,5	K562	blood:
3	chr6:45897935..45898821-chr6:46377732..46378655,2	MCF-7	breast:
4	chr6:45897865..45898727-chr6:45982870..45983433,2	MCF-7	breast:
5	chr6:45898210..45898759-chr6:45913836..45914644,2	MCF-7	breast:
6	chr6:45896173..45899025-chr6:45900583..45902149,3	K562	blood:
7	chr6:45898314..45898956-chr6:46593729..46594636,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112782	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1338468	1.00[EUR][1000 genomes]
rs2022420	1.00[EUR][1000 genomes]
rs58075690	1.00[EUR][1000 genomes]
rs59418367	1.00[EUR][1000 genomes]
rs60072106	1.00[EUR][1000 genomes]
rs73454889	1.00[EUR][1000 genomes]
rs73456748	1.00[AMR][1000 genomes]
rs73735485	1.00[EUR][1000 genomes]
rs73735486	1.00[EUR][1000 genomes]
rs73735489	1.00[EUR][1000 genomes]
rs73738315	1.00[EUR][1000 genomes]
rs73738316	1.00[EUR][1000 genomes]
rs7760252	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:45886800-45910600	Weak transcription	Psoas Muscle	Psoas
3	chr6:45890600-45901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:45894400-45898600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:45895400-45910800	Weak transcription	Placenta	Placenta
6	chr6:45895600-45898800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:45896200-45901400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:45896400-45899200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:45897200-45899200	Enhancers	Fetal Lung	lung
10	chr6:45897400-45898600	Enhancers	Left Ventricle	heart
11	chr6:45897400-45899200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:45897400-45899200	Enhancers	Right Ventricle	heart
13	chr6:45897400-45899400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:45897800-45898600	Enhancers	Brain Germinal Matrix	brain
15	chr6:45897800-45898600	Enhancers	Stomach Smooth Muscle	stomach
16	chr6:45897800-45898800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:45897800-45901400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:45898000-45898600	Enhancers	Right Atrium	heart
19	chr6:45898000-45898600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:45898000-45898800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:45898000-45898800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:45898000-45898800	Enhancers	Brain Substantia Nigra	brain
23	chr6:45898000-45899000	Enhancers	Fetal Heart	heart
24	chr6:45898000-45899200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:45898200-45898600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr6:45898200-45898600	Enhancers	Fetal Stomach	stomach
27	chr6:45898200-45901600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:45898200-45904400	Weak transcription	Spleen	Spleen
29	chr6:45898400-45898600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:45898400-45898600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:45898400-45898600	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr6:45898400-45898600	Enhancers	Osteobl	bone
33	chr6:45898400-45898800	Enhancers	Liver	Liver
34	chr6:45898400-45898800	Enhancers	Colonic Mucosa	Colon
35	chr6:45898400-45898800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr6:45898400-45898800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr6:45898400-45899000	Enhancers	Fetal Intestine Large	intestine
38	chr6:45898400-45899200	Genic enhancers	Fetal Intestine Small	intestine
39	chr6:45898400-45899200	Enhancers	Fetal Kidney	kidney
40	chr6:45898400-45899200	Enhancers	Hela-S3	cervix

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