Variant report

Variant	rs7760252
Chromosome Location	chr6:45950756-45950757
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1338468	1.00[EUR][1000 genomes]
rs2022420	1.00[EUR][1000 genomes]
rs58075690	1.00[EUR][1000 genomes]
rs59418367	1.00[EUR][1000 genomes]
rs60072106	1.00[EUR][1000 genomes]
rs73454889	1.00[EUR][1000 genomes]
rs73735485	1.00[EUR][1000 genomes]
rs73735486	1.00[EUR][1000 genomes]
rs73735487	1.00[EUR][1000 genomes]
rs73735489	1.00[EUR][1000 genomes]
rs73738315	1.00[EUR][1000 genomes]
rs73738316	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv885867	chr6:45936223-45982976	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45938600-45953200	Weak transcription	Lung	lung
2	chr6:45943400-45952600	Weak transcription	Placenta	Placenta
3	chr6:45946600-45954800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:45946800-45952600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:45947200-45951000	Weak transcription	Right Atrium	heart
6	chr6:45949200-45950800	Enhancers	Fetal Intestine Large	intestine
7	chr6:45949200-45951600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:45949400-45954600	Weak transcription	Fetal Kidney	kidney
9	chr6:45949800-45951400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr6:45950000-45950800	Weak transcription	Left Ventricle	heart
11	chr6:45950000-45950800	Weak transcription	Right Ventricle	heart
12	chr6:45950000-45950800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:45950400-45951200	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:45950600-45951000	Enhancers	Fetal Heart	heart
15	chr6:45950600-45951200	Enhancers	Fetal Intestine Small	intestine
16	chr6:45950600-45960200	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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