Variant report

Variant	rs62405029
Chromosome Location	chr6:55809291-55809292
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56665058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61391371	0.86[EUR][1000 genomes]
rs62404996	0.82[EUR][1000 genomes]
rs62404997	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62404998	0.93[EUR][1000 genomes]
rs62404999	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62405002	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62405034	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405035	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405036	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405037	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405039	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405041	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405042	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405043	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405044	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405045	1.00[EUR][1000 genomes]
rs62406065	0.89[EUR][1000 genomes]
rs62406067	0.89[EUR][1000 genomes]
rs62406071	0.89[EUR][1000 genomes]
rs62406072	0.89[EUR][1000 genomes]
rs62406075	0.86[EUR][1000 genomes]
rs62406076	0.86[EUR][1000 genomes]
rs62406077	0.86[EUR][1000 genomes]
rs6936317	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7740526	0.89[EUR][1000 genomes]
rs7748142	0.96[EUR][1000 genomes]
rs7770907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9475520	0.83[EUR][1000 genomes]
rs9475521	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1024174	chr6:55713889-55829936	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv5312	chr6:55784991-55830051	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55807000-55809600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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