Variant report

Variant	rs62405044
Chromosome Location	chr6:55833882-55833883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs56665058	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61391371	0.86[EUR][1000 genomes]
rs62404993	0.86[AMR][1000 genomes]
rs62404994	0.86[AMR][1000 genomes]
rs62404996	0.82[EUR][1000 genomes]
rs62404997	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62404998	0.93[EUR][1000 genomes]
rs62404999	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62405002	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62405029	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405038	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405039	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405040	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405043	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62405045	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406065	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62406067	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62406071	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62406072	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62406075	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62406076	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62406077	0.86[EUR][1000 genomes]
rs6936317	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7740526	0.89[EUR][1000 genomes]
rs7748142	0.96[EUR][1000 genomes]
rs7770907	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9464305	0.86[AMR][1000 genomes]
rs9475468	0.86[AMR][1000 genomes]
rs9475520	0.83[EUR][1000 genomes]
rs9475521	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1029301	chr6:55713889-55834480	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv3347160	chr6:55822042-55847532	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3491370	chr6:55823042-55838002	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3491371	chr6:55823042-55838002	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv603165	chr6:55824013-55846527	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2763983	chr6:55824452-55843660	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3517580	chr6:55824843-55847741	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3517577	chr6:55825419-55848451	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv603166	chr6:55825495-55846238	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv603167	chr6:55825495-55846527	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3474011	chr6:55825808-55846835	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3517581	chr6:55825843-55846821	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3517578	chr6:55825852-55846800	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3474010	chr6:55825859-55846793	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3517576	chr6:55825888-55846761	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3522124	chr6:55825907-55846762	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3474012	chr6:55825958-55846713	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3517582	chr6:55825958-55846713	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3522125	chr6:55825958-55846713	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3517579	chr6:55826018-55847716	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv13991	chr6:55826123-55846698	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv603169	chr6:55826137-55835739	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv603170	chr6:55826137-55836618	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv603171	chr6:55826137-55837287	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv603172	chr6:55826137-55846238	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv2422049	chr6:55826137-55846527	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv603173	chr6:55826137-55846527	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv603174	chr6:55826137-55849224	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv603175	chr6:55826137-55850440	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv603176	chr6:55826137-55867789	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv442000	chr6:55826155-55843660	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv514362	chr6:55826705-55843625	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv603178	chr6:55828425-55836618	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
38	nsv603179	chr6:55828425-55846238	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv603180	chr6:55828425-55846527	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv603181	chr6:55828727-55837287	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
41	nsv603182	chr6:55828727-55846238	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv603183	chr6:55828727-55846527	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv603184	chr6:55829863-55836618	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
44	nsv603185	chr6:55829863-55846238	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv603186	chr6:55829863-55846527	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv970683	chr6:55829962-55834870	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
47	esv3498415	chr6:55830704-55911231	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
48	esv3498412	chr6:55830968-55909153	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
49	esv3498414	chr6:55831055-55909122	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv2584235	chr6:55831055-55910117	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55833400-55834200	Enhancers	Fetal Stomach	stomach
2	chr6:55833800-55834000	Enhancers	Colon Smooth Muscle	Colon
3	chr6:55833800-55834800	Enhancers	Fetal Lung	lung

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