Variant report

Variant	rs62406067
Chromosome Location	chr6:55848116-55848117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs56665058	0.89[EUR][1000 genomes]
rs62404997	0.82[EUR][1000 genomes]
rs62404998	0.82[EUR][1000 genomes]
rs62404999	0.82[EUR][1000 genomes]
rs62405029	0.89[EUR][1000 genomes]
rs62405034	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405035	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405036	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405037	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405038	0.89[EUR][1000 genomes]
rs62405039	0.89[EUR][1000 genomes]
rs62405040	0.89[EUR][1000 genomes]
rs62405041	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405042	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405043	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405044	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62405045	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62406065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406075	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62406076	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62406077	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62406109	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62406110	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62406111	0.90[EUR][1000 genomes]
rs62406112	0.90[EUR][1000 genomes]
rs62406113	0.90[EUR][1000 genomes]
rs62406114	0.90[EUR][1000 genomes]
rs62406115	0.90[EUR][1000 genomes]
rs62406116	0.90[EUR][1000 genomes]
rs62406118	0.90[EUR][1000 genomes]
rs62406119	0.90[EUR][1000 genomes]
rs62406120	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62406124	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62406126	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6936317	0.82[EUR][1000 genomes]
rs7740526	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745793	0.90[EUR][1000 genomes]
rs7748142	0.86[EUR][1000 genomes]
rs7749409	0.90[EUR][1000 genomes]
rs7755079	0.90[EUR][1000 genomes]
rs7756577	0.90[EUR][1000 genomes]
rs7770907	0.89[EUR][1000 genomes]
rs7775091	0.90[EUR][1000 genomes]
rs9464329	0.90[EUR][1000 genomes]
rs9464330	0.90[EUR][1000 genomes]
rs9464331	0.90[EUR][1000 genomes]
rs9464332	0.90[EUR][1000 genomes]
rs9464335	0.86[EUR][1000 genomes]
rs9475520	0.93[EUR][1000 genomes]
rs9475521	0.93[EUR][1000 genomes]
rs9475522	0.90[EUR][1000 genomes]
rs9475523	0.81[EUR][1000 genomes]
rs9475524	0.90[EUR][1000 genomes]
rs9475525	0.90[EUR][1000 genomes]
rs9475526	0.90[EUR][1000 genomes]
rs9475527	0.90[EUR][1000 genomes]
rs9475528	0.90[EUR][1000 genomes]
rs9475529	0.90[EUR][1000 genomes]
rs9475531	0.90[EUR][1000 genomes]
rs9475532	0.90[EUR][1000 genomes]
rs9475537	0.90[EUR][1000 genomes]
rs9475538	0.90[EUR][1000 genomes]
rs9475540	0.90[EUR][1000 genomes]
rs9475542	0.90[EUR][1000 genomes]
rs9475544	0.90[EUR][1000 genomes]
rs9475546	0.90[EUR][1000 genomes]
rs9475547	0.90[EUR][1000 genomes]
rs9475548	0.90[EUR][1000 genomes]
rs9475549	0.90[EUR][1000 genomes]
rs9475551	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv830665	chr6:55755560-55920219	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv526703	chr6:55810482-56023811	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv3517577	chr6:55825419-55848451	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv603174	chr6:55826137-55849224	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv603175	chr6:55826137-55850440	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv603176	chr6:55826137-55867789	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3498415	chr6:55830704-55911231	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3498412	chr6:55830968-55909153	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3498414	chr6:55831055-55909122	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2584235	chr6:55831055-55910117	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3498413	chr6:55831100-55909183	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3498416	chr6:55831124-55909074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv603188	chr6:55832161-55850440	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1031430	chr6:55834480-55906937	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv526771	chr6:55846527-55894135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55847200-55848400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:55847800-55848200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links