Variant report

Variant	rs62427138
Chromosome Location	chr6:144377479-144377480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144328105..144330503-chr6:144377295..144379145,2	K562	blood:
2	chr6:144375075..144378072-chr6:144379942..144382591,2	MCF-7	breast:
3	chr6:144373653..144378437-chr6:144382372..144387583,6	MCF-7	breast:
4	chr6:144375975..144378757-chr6:144385007..144388377,3	K562	blood:
5	chr6:144376991..144380042-chr6:144383907..144387105,4	K562	blood:
6	chr6:144370110..144373027-chr6:144375015..144377542,2	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28384403	0.82[EUR][1000 genomes]
rs55847642	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55928616	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56282161	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59906266	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62427139	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62427144	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62427148	0.88[EUR][1000 genomes]
rs62428867	0.82[EUR][1000 genomes]
rs62428869	0.85[EUR][1000 genomes]
rs6926546	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144375800-144384000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:144375800-144384600	Weak transcription	Gastric	stomach
3	chr6:144376800-144377600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:144376800-144384200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:144377000-144377600	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:144377000-144377600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:144377000-144377600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:144377000-144377600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr6:144377000-144377600	Enhancers	Fetal Thymus	thymus
10	chr6:144377000-144377600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:144377000-144384000	Weak transcription	Primary B cells from cord blood	blood
12	chr6:144377200-144377600	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:144377200-144377600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:144377200-144377600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr6:144377200-144377600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:144377200-144377600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:144377200-144378200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:144377200-144378200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr6:144377200-144383800	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr6:144377200-144383800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:144377200-144383800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:144377400-144380600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:144377400-144383800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links