Variant report

Variant	rs6926546
Chromosome Location	chr6:144407790-144407791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144278626..144280839-chr6:144407684..144410223,2	K562	blood:
2	chr6:144384320..144386819-chr6:144406217..144408296,2	MCF-7	breast:
3	chr6:144389593..144391414-chr6:144406307..144408585,2	K562	blood:
4	chr6:144407402..144409658-chr6:144409973..144413470,4	K562	blood:

Variant related genes	Relation type
ENSG00000118495	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28384403	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4552753	1.00[CHD][hapmap]
rs55847642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55928616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56282161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59906266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62427138	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62427139	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62427144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62427148	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62428867	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62428869	0.97[EUR][1000 genomes]
rs6570608	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144396600-144414800	Weak transcription	Gastric	stomach
3	chr6:144399400-144413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:144399400-144414600	Weak transcription	Primary T cells from cord blood	blood
5	chr6:144399600-144414800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:144399800-144414800	Weak transcription	Ovary	ovary
7	chr6:144400200-144408400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:144403200-144414800	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:144404000-144414800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:144404200-144408600	Weak transcription	K562	blood
11	chr6:144404200-144414600	Weak transcription	Esophagus	oesophagus
12	chr6:144404200-144414800	Weak transcription	Lung	lung
13	chr6:144404200-144415000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:144404200-144415000	Weak transcription	Thymus	Thymus
15	chr6:144404400-144414000	Weak transcription	Fetal Brain Female	brain
16	chr6:144404600-144414600	Weak transcription	Brain Germinal Matrix	brain
17	chr6:144404600-144414800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:144404800-144409200	Weak transcription	GM12878-XiMat	blood
19	chr6:144404800-144414400	Weak transcription	Liver	Liver
20	chr6:144404800-144414800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:144404800-144415200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:144404800-144415200	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:144405000-144414800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:144405000-144414800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr6:144405000-144415600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:144405200-144408800	Weak transcription	Left Ventricle	heart
27	chr6:144405200-144409000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:144405200-144414600	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:144405200-144414800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:144405400-144414800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:144405400-144415000	Weak transcription	Primary B cells from cord blood	blood
32	chr6:144405400-144415000	Weak transcription	Fetal Kidney	kidney
33	chr6:144405400-144415200	Weak transcription	Placenta	Placenta
34	chr6:144405600-144415200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:144405800-144415000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:144406000-144414600	Weak transcription	Fetal Thymus	thymus
37	chr6:144406000-144414600	Weak transcription	Pancreas	Pancrea
38	chr6:144406000-144416000	Weak transcription	Aorta	Aorta
39	chr6:144406200-144414400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:144406600-144408800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:144407000-144408800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:144407200-144408800	Weak transcription	Adipose Nuclei	Adipose
43	chr6:144407400-144414600	Weak transcription	Fetal Lung	lung
44	chr6:144407600-144414600	Weak transcription	Fetal Intestine Small	intestine
45	chr6:144407600-144414600	Weak transcription	HepG2	liver
46	chr6:144407600-144415200	Weak transcription	Brain Anterior Caudate	brain
47	chr6:144407600-144415200	Weak transcription	Fetal Stomach	stomach
48	chr6:144407600-144415400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links