Variant report

Variant	rs55928616
Chromosome Location	chr6:144399821-144399822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs28384403	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55847642	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56282161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59906266	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62427138	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62427139	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62427144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62427148	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62428867	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62428869	0.97[EUR][1000 genomes]
rs6926546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144386400-144408800	Weak transcription	Right Ventricle	heart
2	chr6:144396600-144414800	Weak transcription	Gastric	stomach
3	chr6:144397800-144402000	Weak transcription	GM12878-XiMat	blood
4	chr6:144398800-144400200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:144398800-144400200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:144398800-144400200	Enhancers	K562	blood
7	chr6:144399200-144400400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:144399400-144413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:144399400-144414600	Weak transcription	Primary T cells from cord blood	blood
10	chr6:144399600-144414800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:144399800-144414800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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