Variant report

Variant	rs62428867
Chromosome Location	chr6:144420429-144420430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11752662	1.00[ASN][1000 genomes]
rs11753175	1.00[ASN][1000 genomes]
rs11753428	1.00[ASN][1000 genomes]
rs11755758	1.00[ASN][1000 genomes]
rs11758344	0.97[ASN][1000 genomes]
rs11759466	1.00[ASN][1000 genomes]
rs28384403	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55847642	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55928616	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56282161	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59906266	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62427138	0.82[EUR][1000 genomes]
rs62427139	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62427144	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62427148	0.93[EUR][1000 genomes]
rs62428869	0.93[EUR][1000 genomes]
rs6926546	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886738	chr6:144387698-144428387	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144417800-144425800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:144417800-144432600	Weak transcription	Right Atrium	heart
3	chr6:144420400-144421600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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