Variant report

Variant	rs634782
Chromosome Location	chr10:96942760-96942761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:96942649-96942999	SH-SY5Y	brain:	n/a	n/a
2	GATA1	chr10:96942554-96943716	PBDE	blood:	n/a	n/a
3	MXI1	chr10:96942749-96944016	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96941976..96944883-chr10:96989765..96992078,3	MCF-7	breast:

Variant related genes	Relation type
PAWRP1	TF binding region
ENSG00000234026	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1620060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs590427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs601746	0.89[AFR][1000 genomes]
rs616450	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626465	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634327	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs649929	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs652319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs670565	0.81[AFR][1000 genomes]
rs675433	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs686267	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs815241	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96932000-96943000	Weak transcription	Pancreas	Pancrea
2	chr10:96941400-96942800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:96941400-96942800	Enhancers	Fetal Intestine Small	intestine
4	chr10:96941400-96942800	Enhancers	HUVEC	blood vessel
5	chr10:96941600-96942800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:96941600-96942800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:96941600-96943000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:96941800-96942800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:96941800-96943000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:96942000-96942800	Weak transcription	A549	lung
11	chr10:96942000-96942800	Weak transcription	NHDF-Ad	bronchial
12	chr10:96942000-96943000	Weak transcription	Stomach Mucosa	stomach
13	chr10:96942000-96943800	Weak transcription	Fetal Lung	lung
14	chr10:96942000-96948200	Weak transcription	HepG2	liver
15	chr10:96942200-96942800	Enhancers	Fetal Kidney	kidney
16	chr10:96942400-96942800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:96942400-96942800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:96942400-96942800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:96942400-96942800	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:96942400-96942800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:96942400-96942800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:96942400-96942800	Weak transcription	Fetal Intestine Large	intestine
23	chr10:96942400-96943800	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr10:96942400-96944000	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr10:96942400-96944200	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr10:96942600-96942800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:96942600-96942800	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:96942600-96943200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:96942600-96943600	Active TSS	H1 Cell Line	embryonic stem cell
30	chr10:96942600-96943600	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:96942600-96944000	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr10:96942600-96944000	Active TSS	Liver	Liver

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