Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96389495..96390471-chr10:96935594..96936525,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11572100	0.80[YRI][hapmap]
rs11572127	0.85[CEU][hapmap]
rs11572170	0.80[YRI][hapmap]
rs1620060	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs485102	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs584227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs590427	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs601746	1.00[YRI][hapmap]
rs616450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626465	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634327	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs649929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs650243	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs675433	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs680829	0.85[CEU][hapmap];0.80[YRI][hapmap]
rs686267	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs815241	0.85[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9651411	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96926400-96937400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:96931800-96937200	Weak transcription	Liver	Liver
3	chr10:96932000-96943000	Weak transcription	Pancreas	Pancrea
4	chr10:96932800-96941400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:96935600-96936600	ZNF genes & repeats	Fetal Intestine Small	intestine

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