Variant report

Variant	rs815241
Chromosome Location	chr10:96957147-96957148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1620060	0.85[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs485102	0.80[YRI][hapmap]
rs584227	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs590427	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs601746	1.00[YRI][hapmap]
rs616450	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs626042	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs626336	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs626465	0.85[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs626831	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs634327	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs634782	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs638926	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs649929	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs650243	0.85[CEU][hapmap]
rs652319	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs675433	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs686267	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1834151	chr10:96925446-96992955	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96944000-96961400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:96944200-96990400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:96949800-96980600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:96952800-96974600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:96956000-96960600	Weak transcription	Primary B cells from cord blood	blood
6	chr10:96956000-96969000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:96956000-96973200	Weak transcription	Fetal Stomach	stomach
8	chr10:96956200-96961600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:96956200-96962800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:96956200-96962800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:96956200-96963200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr10:96956200-96963200	Weak transcription	Fetal Thymus	thymus
13	chr10:96956200-96968800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr10:96956200-96979000	Weak transcription	Pancreas	Pancrea
15	chr10:96956200-96990400	Weak transcription	Aorta	Aorta
16	chr10:96956400-96968400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:96957000-96960400	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links