Variant report

Variant	rs649929
Chromosome Location	chr10:96898561-96898562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1620060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs590427	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs616450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626465	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626831	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634327	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs634782	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs638926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs652319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs659309	0.86[AFR][1000 genomes]
rs670565	0.88[AFR][1000 genomes]
rs675433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs686267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7082506	0.89[AFR][1000 genomes]
rs815241	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv551985	chr10:96870565-96920198	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96890600-96904400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:96891200-96902400	Weak transcription	Aorta	Aorta
3	chr10:96893000-96903800	Weak transcription	Pancreas	Pancrea
4	chr10:96893400-96900600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:96893400-96901000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:96894000-96906600	Weak transcription	Primary B cells from cord blood	blood
7	chr10:96895800-96902600	Weak transcription	Left Ventricle	heart
8	chr10:96896600-96899400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:96896600-96904400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:96896800-96902400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:96896800-96902400	Weak transcription	Fetal Intestine Small	intestine
12	chr10:96897000-96899200	Enhancers	HepG2	liver
13	chr10:96898400-96899400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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