Variant report

Variant	rs638496
Chromosome Location	chr11:121011507-121011508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10892687	0.88[EUR][1000 genomes]
rs11218155	0.97[ASN][1000 genomes]
rs12361100	0.91[ASN][1000 genomes]
rs12575628	0.91[ASN][1000 genomes]
rs1310521	0.81[EUR][1000 genomes]
rs1310528	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2155364	0.93[ASN][1000 genomes]
rs2155365	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs22298	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4554895	0.99[ASN][1000 genomes]
rs481703	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs492047	0.87[EUR][1000 genomes]
rs492294	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4935763	0.87[EUR][1000 genomes]
rs4936580	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4936593	0.87[EUR][1000 genomes]
rs510722	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs527258	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs543119	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs546916	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs552580	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs559301	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560365	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs560401	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs561195	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561227	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs562281	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs576271	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs582876	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs584355	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs588917	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs589790	0.98[ASN][1000 genomes]
rs592160	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs594951	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596882	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599894	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs601102	0.87[EUR][1000 genomes]
rs605379	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs618523	0.85[EUR][1000 genomes]
rs620896	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs631969	0.85[EUR][1000 genomes]
rs633012	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs638463	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640332	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6589858	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs662496	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs663031	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs663435	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs677336	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs677775	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs679607	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs686882	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs688641	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7105435	0.85[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120994000-121016200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:120996800-121016400	Weak transcription	Ovary	ovary
4	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:120999200-121016200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:121000000-121025200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:121001200-121012000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:121001400-121028000	Weak transcription	Fetal Stomach	stomach
10	chr11:121005800-121023600	Weak transcription	Left Ventricle	heart
11	chr11:121006000-121024800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:121006400-121035400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
14	chr11:121006600-121034800	Weak transcription	HSMMtube	muscle
15	chr11:121007000-121028800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:121008000-121028600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:121008800-121018600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:121008800-121023800	Weak transcription	Fetal Brain Female	brain
19	chr11:121008800-121025600	Weak transcription	Brain Germinal Matrix	brain
20	chr11:121008800-121032800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:121009000-121042800	Weak transcription	Pancreas	Pancrea
22	chr11:121009400-121016400	Weak transcription	Gastric	stomach
23	chr11:121011400-121018400	Weak transcription	Aorta	Aorta
24	chr11:121011400-121040200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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