Variant report

Variant	rs686882
Chromosome Location	chr11:121023992-121023993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121010865..121012486-chr11:121021940..121024127,2	K562	blood:

Variant related genes	Relation type
ENSG00000109927	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10892687	0.92[EUR][1000 genomes]
rs11218155	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs11218169	0.82[ASN][1000 genomes]
rs12361100	0.98[ASN][1000 genomes]
rs12575628	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1310521	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1310528	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2155364	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2155365	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2155369	0.90[JPT][hapmap]
rs22298	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4554895	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs481703	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs492047	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs492294	1.00[CEU][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4935763	0.91[EUR][1000 genomes]
rs4936580	0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4936593	0.91[EUR][1000 genomes]
rs510722	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs527258	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs543119	0.92[CEU][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs546916	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs552580	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs559301	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs560365	0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs560401	0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs561195	0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs561227	0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs562281	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs576271	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs582876	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs584355	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs588917	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs589790	0.89[ASN][1000 genomes]
rs592160	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs594951	0.87[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs596882	0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs599894	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs601102	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs605379	0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs618523	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs620896	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs631969	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs633012	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs638463	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs638496	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs640332	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6589858	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs662496	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs663031	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs663435	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs677336	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs677775	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs679607	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs688641	0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7105435	0.89[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:121000000-121025200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:121001400-121028000	Weak transcription	Fetal Stomach	stomach
6	chr11:121006000-121024800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:121006400-121035400	Weak transcription	Brain Angular Gyrus	brain
8	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
9	chr11:121006600-121034800	Weak transcription	HSMMtube	muscle
10	chr11:121007000-121028800	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:121008000-121028600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:121008800-121025600	Weak transcription	Brain Germinal Matrix	brain
13	chr11:121008800-121032800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:121009000-121042800	Weak transcription	Pancreas	Pancrea
15	chr11:121011400-121040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:121012800-121028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:121017000-121025600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:121017000-121031600	Weak transcription	Gastric	stomach
19	chr11:121017000-121042400	Weak transcription	Brain Substantia Nigra	brain
20	chr11:121018200-121031000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:121019000-121028600	Weak transcription	Aorta	Aorta
22	chr11:121020600-121038800	Weak transcription	Ovary	ovary
23	chr11:121022800-121030400	Weak transcription	Fetal Brain Male	brain
24	chr11:121023600-121024400	Strong transcription	Left Ventricle	heart
25	chr11:121023800-121024400	Strong transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links