Variant report

Variant	rs527258
Chromosome Location	chr11:121027240-121027241
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10892687	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11218169	0.92[ASN][1000 genomes]
rs11218175	0.84[ASN][1000 genomes]
rs11218176	0.90[ASN][1000 genomes]
rs11218191	0.89[ASN][1000 genomes]
rs11218198	0.82[ASN][1000 genomes]
rs11524440	0.87[ASN][1000 genomes]
rs12361100	0.84[ASN][1000 genomes]
rs12575628	0.84[ASN][1000 genomes]
rs1310521	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1310528	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17124937	0.82[ASN][1000 genomes]
rs17124940	0.82[ASN][1000 genomes]
rs17124945	0.81[ASN][1000 genomes]
rs2155364	0.81[ASN][1000 genomes]
rs2155365	0.95[EUR][1000 genomes]
rs2155369	0.90[ASN][1000 genomes]
rs22298	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs481703	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs492047	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs492294	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4935763	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4936593	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs510722	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs543119	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs546916	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs552580	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs562281	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs576271	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs582876	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs584355	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs588917	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs592160	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs594951	0.83[EUR][1000 genomes]
rs599894	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60016568	0.83[ASN][1000 genomes]
rs601102	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs618523	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs620896	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs631969	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs633012	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs638496	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs640332	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6589858	0.82[AMR][1000 genomes]
rs662496	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs663031	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs663435	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs677336	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs677775	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs679607	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs686882	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs688641	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105435	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:121001400-121028000	Weak transcription	Fetal Stomach	stomach
5	chr11:121006400-121035400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
7	chr11:121006600-121034800	Weak transcription	HSMMtube	muscle
8	chr11:121007000-121028800	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:121008000-121028600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:121008800-121032800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:121009000-121042800	Weak transcription	Pancreas	Pancrea
12	chr11:121011400-121040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:121012800-121028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:121017000-121031600	Weak transcription	Gastric	stomach
15	chr11:121017000-121042400	Weak transcription	Brain Substantia Nigra	brain
16	chr11:121018200-121031000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:121019000-121028600	Weak transcription	Aorta	Aorta
18	chr11:121020600-121038800	Weak transcription	Ovary	ovary
19	chr11:121022800-121030400	Weak transcription	Fetal Brain Male	brain
20	chr11:121024400-121038800	Weak transcription	Left Ventricle	heart
21	chr11:121024400-121041200	Weak transcription	Fetal Brain Female	brain
22	chr11:121025400-121041200	Weak transcription	Psoas Muscle	Psoas
23	chr11:121025600-121041600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:121026000-121029600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:121026400-121030400	Weak transcription	Brain Germinal Matrix	brain
26	chr11:121027200-121030600	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links