Variant report

Variant	rs60016568
Chromosome Location	chr11:121062777-121062778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10892687	0.99[ASN][1000 genomes]
rs11218169	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11218175	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11218176	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11218191	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11218198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11524440	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12361100	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12575628	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1310521	0.88[ASN][1000 genomes]
rs1310528	0.88[ASN][1000 genomes]
rs17124937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17124940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17124945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2155364	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2155369	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs481703	0.92[ASN][1000 genomes]
rs492047	0.99[ASN][1000 genomes]
rs4935763	0.98[ASN][1000 genomes]
rs4936593	0.98[ASN][1000 genomes]
rs510722	0.92[ASN][1000 genomes]
rs527258	0.83[ASN][1000 genomes]
rs546916	0.82[ASN][1000 genomes]
rs552580	0.88[ASN][1000 genomes]
rs562281	0.92[ASN][1000 genomes]
rs576271	0.88[ASN][1000 genomes]
rs582876	0.88[ASN][1000 genomes]
rs584355	0.88[ASN][1000 genomes]
rs589790	0.84[EUR][1000 genomes]
rs592160	0.92[ASN][1000 genomes]
rs601102	0.99[ASN][1000 genomes]
rs618523	0.98[ASN][1000 genomes]
rs620896	0.92[ASN][1000 genomes]
rs631969	0.98[ASN][1000 genomes]
rs633012	0.88[ASN][1000 genomes]
rs640332	0.92[ASN][1000 genomes]
rs662496	0.89[ASN][1000 genomes]
rs663031	0.88[ASN][1000 genomes]
rs663435	0.88[ASN][1000 genomes]
rs677336	0.88[ASN][1000 genomes]
rs677775	0.88[ASN][1000 genomes]
rs679607	0.88[ASN][1000 genomes]
rs688641	0.88[ASN][1000 genomes]
rs7105435	0.88[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121052800-121065600	Weak transcription	Gastric	stomach
2	chr11:121053800-121065600	Weak transcription	Pancreas	Pancrea
3	chr11:121055400-121065600	Weak transcription	Ovary	ovary
4	chr11:121055600-121065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:121056800-121065400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:121056800-121065600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:121058000-121065400	Weak transcription	Fetal Lung	lung
8	chr11:121058800-121069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:121061800-121063200	Enhancers	Right Atrium	heart
10	chr11:121062600-121063000	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:121062600-121063200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:121062600-121065600	Weak transcription	HSMMtube	muscle
13	chr11:121062600-121070000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links