Variant report

Variant	rs2155364
Chromosome Location	chr11:121017301-121017302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121011962..121013592-chr11:121015192..121017485,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11218155	0.84[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11218169	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11218175	0.92[EUR][1000 genomes]
rs11218176	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11218191	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11218198	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11524440	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12361100	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12575628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17124937	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17124940	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17124945	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2155365	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2155369	0.91[CEU][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs22298	0.92[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4554895	0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs481703	0.85[JPT][hapmap]
rs492294	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4936580	0.84[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs527258	0.81[ASN][1000 genomes]
rs543119	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs552580	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs559301	0.93[ASN][1000 genomes]
rs560365	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs560401	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs561195	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs561227	0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs588917	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs589790	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs594951	0.84[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs596882	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs599894	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs60016568	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs605379	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs618523	0.82[CHD][hapmap];0.85[JPT][hapmap]
rs620896	0.84[CHD][hapmap];0.85[JPT][hapmap]
rs638463	0.93[ASN][1000 genomes]
rs638496	0.93[ASN][1000 genomes]
rs6589858	0.86[ASN][1000 genomes]
rs662496	0.85[JPT][hapmap]
rs663435	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs686882	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs688641	0.85[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2155364	SIDT2	cis	cerebellum	SCAN
rs2155364	FXYD6	cis	cerebellum	SCAN
rs2155364	TBCEL	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:121000000-121025200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:121001400-121028000	Weak transcription	Fetal Stomach	stomach
6	chr11:121005800-121023600	Weak transcription	Left Ventricle	heart
7	chr11:121006000-121024800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:121006400-121035400	Weak transcription	Brain Angular Gyrus	brain
9	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
10	chr11:121006600-121034800	Weak transcription	HSMMtube	muscle
11	chr11:121007000-121028800	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:121008000-121028600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:121008800-121018600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:121008800-121023800	Weak transcription	Fetal Brain Female	brain
15	chr11:121008800-121025600	Weak transcription	Brain Germinal Matrix	brain
16	chr11:121008800-121032800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:121009000-121042800	Weak transcription	Pancreas	Pancrea
18	chr11:121011400-121018400	Weak transcription	Aorta	Aorta
19	chr11:121011400-121040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:121012800-121028400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:121016200-121018600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr11:121017000-121017400	Weak transcription	Ovary	ovary
23	chr11:121017000-121025600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:121017000-121031600	Weak transcription	Gastric	stomach
25	chr11:121017000-121042400	Weak transcription	Brain Substantia Nigra	brain

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