Variant report

Variant	rs17124945
Chromosome Location	chr11:121068047-121068048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10892687	0.97[ASN][1000 genomes]
rs11218155	0.85[JPT][hapmap]
rs11218169	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11218175	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11218176	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11218191	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11218198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11524440	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12361100	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12575628	0.83[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1310521	0.86[ASN][1000 genomes]
rs1310528	0.87[ASN][1000 genomes]
rs17124937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17124940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2155364	0.83[CEU][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2155365	0.85[JPT][hapmap]
rs2155369	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs22298	0.90[JPT][hapmap]
rs4554895	0.85[JPT][hapmap]
rs481703	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs492047	0.97[ASN][1000 genomes]
rs492294	0.86[JPT][hapmap]
rs4935763	0.98[ASN][1000 genomes]
rs4936580	0.85[JPT][hapmap]
rs4936593	0.98[ASN][1000 genomes]
rs510722	0.90[ASN][1000 genomes]
rs527258	0.81[ASN][1000 genomes]
rs543119	0.86[JPT][hapmap]
rs546916	0.81[ASN][1000 genomes]
rs552580	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs560365	0.86[JPT][hapmap]
rs560401	0.85[JPT][hapmap]
rs561195	0.85[JPT][hapmap]
rs562281	0.90[ASN][1000 genomes]
rs576271	0.87[ASN][1000 genomes]
rs582876	0.86[ASN][1000 genomes]
rs584355	0.87[ASN][1000 genomes]
rs588917	0.86[JPT][hapmap]
rs589790	0.83[EUR][1000 genomes]
rs592160	0.90[ASN][1000 genomes]
rs594951	0.85[JPT][hapmap]
rs596882	0.86[JPT][hapmap]
rs599894	0.90[JPT][hapmap]
rs60016568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs601102	0.97[ASN][1000 genomes]
rs605379	0.86[JPT][hapmap]
rs618523	0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs620896	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs631969	0.98[ASN][1000 genomes]
rs633012	0.87[ASN][1000 genomes]
rs640332	0.91[ASN][1000 genomes]
rs662496	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs663031	0.87[ASN][1000 genomes]
rs663435	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs677336	0.86[ASN][1000 genomes]
rs677775	0.86[ASN][1000 genomes]
rs679607	0.87[ASN][1000 genomes]
rs686882	0.90[JPT][hapmap]
rs688641	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7105435	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975384	chr11:121067538-121074700	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121058800-121069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:121062600-121070000	Weak transcription	Fetal Heart	heart
3	chr11:121064600-121069000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:121065800-121070200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:121066000-121068800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:121066000-121068800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:121066000-121068800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:121066000-121069200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:121066400-121069200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:121066400-121069200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:121067800-121068600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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